PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1063481g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 338aa    MW: 37011.6 Da    PI: 5.1747
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1063481g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS175.34.5e-542430046297
                GRAS  46 teALaarlarsvselykalppsetsekn....sseelaalkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlq 130
                         + AL +r +r  ++ +k l++ +++ +     ++++++a+ l  f +++P+++f++ +a  aI eaveg  +vHi+D++ ++++Q p+L++
  PDK_30s1063481g001  24 LHALITRASR--TGSCKMLTVAAARADAdlslHTHRFSAVDLasFIDLTPWHRFGYSAAHAAIAEAVEGFPAVHIVDLGTTYCMQIPTLID 112
                         4566666666..55555554444443334456677777777789*********************************************** PP

                GRAS 131 aLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp....gEalaVnlvl 208
                          LasRpegpp lRiT  ++ +++         ++ e+g rL +fA++ +v +ef+v+    a+++++l +e+Lrv++    gEal+Vn+++
  PDK_30s1063481g001 113 LLASRPEGPPILRITIPSPTATTalpppiLGLSYDELGARLLNFARSKNVAMEFQVIpsnPADAFDTL-IEQLRVQQlvseGEALIVNCQM 202
                         ***************8888776699998888999**********************955433344444.788888777777********** PP

                GRAS 209 qlhrlldesvsles..........erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                         +lh+++de+++  s           r+ +Lk+++sl+P++v++v+++ad ++++ + r+  a++y +  +d++++ lp+ se+r+++E+  
  PDK_30s1063481g001 203 MLHYIPDETACAISstmsmpssisLRTVFLKALRSLEPTLVTLVDEDADFTASDVVGRLRAAFNYLWIPYDAVDTFLPKGSEQRRWYEAG- 292
                         ******555443333333333555799**************************************************************9. PP

                GRAS 290 lgreivnv 297
                         ++++i+nv
  PDK_30s1063481g001 293 VRWKIENV 300
                         999**998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.8871338IPR005202Transcription factor GRAS
PfamPF035141.6E-5124300IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MQFTESAPPP PPLNLSGLGL AACLHALITR ASRTGSCKML TVAAARADAD LSLHTHRFSA  60
VDLASFIDLT PWHRFGYSAA HAAIAEAVEG FPAVHIVDLG TTYCMQIPTL IDLLASRPEG  120
PPILRITIPS PTATTALPPP ILGLSYDELG ARLLNFARSK NVAMEFQVIP SNPADAFDTL  180
IEQLRVQQLV SEGEALIVNC QMMLHYIPDE TACAISSTMS MPSSISLRTV FLKALRSLEP  240
TLVTLVDEDA DFTASDVVGR LRAAFNYLWI PYDAVDTFLP KGSEQRRWYE AGVRWKIENV  300
KAMLDEHSAG WGLKREEEDL VLTWKGHNVV FATAWVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-222428978308Protein SHORT-ROOT
5b3h_E1e-222428978308Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026656490.10.0scarecrow-like protein 32
SwissprotQ9SN221e-108SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A3Q0HT320.0A0A3Q0HT32_PHODC; scarecrow-like protein 32
STRINGXP_008775518.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-100GRAS family protein