PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1065331g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 291aa MW: 33679.6 Da PI: 6.9698

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1065331g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	152	176	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ +++++H+++ H PDK_30s1065331g004 152 FFCDLCNKQYKLAMEFESHLSSydH 176 67*****************987666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	2.9E-18	55	100	IPR000467	G-patch domain
PROSITE profile	PS50174	16.819	57	102	IPR000467	G-patch domain
Pfam	PF01585	7.3E-16	58	98	IPR000467	G-patch domain
PROSITE pattern	PS00028	0	154	176	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MEGKHYSGRQ EAYFQERQID REEDSGKDFH LPIDHRPTEN LDTENLEQAS LDTQLTSSNV 60 GFRLLQKMGW KGKGLGKNEQ GIIEPIKTGI RDSKLGVGKQ EQDDFFTAEE NVQRRRLDIE 120 LEETEELVRK REVLAEREQK IQTEVKEIKK VFFCDLCNKQ YKLAMEFESH LSSYDHNHRK 180 RFKEMKEMHG SSSRDERQKR EQLRQEKEMA RFAQMADAHK QQQQQQQEQL EVSADTGAPK 240 SASKLLAPDQ RQTLKFGFSR PGVSKKTSTG IGKKPKIAVS SIFGNDSDDE S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026666105.1	0.0	G patch domain-containing protein 8
TrEMBL	A0A2H3ZZG1	0.0	A0A2H3ZZG1_PHODC; G patch domain-containing protein 8
STRING	XP_008810389.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10175	7	9