PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1066811g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 201aa MW: 23840.7 Da PI: 9.3023

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1066811g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.6e-18	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g W + Ede+l+++v+++G+++W++Ia+++ gR++k+c++rw++ PDK_30s1066811g004 4 KGHWRPAEDEKLKELVARYGPHNWNAIAEKLH-GRSGKSCRLRWYNQ 49 789***************************.**********96 PP
2	Myb_DNA-binding	60.5	3.6e-19	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T+eE+e+l+ +++ +G++ W+ Iar ++ gRt++ +k++w+ + PDK_30s1066811g004 56 RNPFTKEEEERLIACHQIHGNR-WAVIARLFP-GRTDNAVKNHWHVV 100 789*****************.*****.*********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.29	1	54	IPR017930	Myb domain
SMART	SM00717	1.4E-15	3	52	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-17	4	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.24E-30	4	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-27	5	57	IPR009057	Homeodomain-like
CDD	cd00167	2.27E-13	7	48	No hit	No description
PROSITE profile	PS51294	20.592	55	105	IPR017930	Myb domain
SMART	SM00717	1.6E-16	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-16	56	99	IPR001005	SANT/Myb domain
CDD	cd00167	1.86E-11	58	101	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.2E-22	58	103	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MCTKGHWRPA EDEKLKELVA RYGPHNWNAI AEKLHGRSGK SCRLRWYNQL DPRINRNPFT 60 KEEEERLIAC HQIHGNRWAV IARLFPGRTD NAVKNHWHVV MARRRRERSR FHGKRARRNL 120 NKGESSKQNS EKEPELRNMV SFIEKCTDRD NSIEFYDFLQ VNSESINTED TLTRKEEQEE 180 GKERESEANV QFIDFFAVGC S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-32	2	104	5	107	B-MYB
1mse_C	3e-32	1	104	1	104	C-Myb DNA-Binding Domain
1msf_C	3e-32	1	104	1	104	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:23781226}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19674407, ECO:0000269\|PubMed:21399993, ECO:0000269\|PubMed:22197883}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791853.1	1e-127	transcription factor MYB52-like isoform X1
Swissprot	Q6R0C4	3e-71	MYB52_ARATH; Transcription factor MYB52
TrEMBL	A0A2H3Y140	1e-126	A0A2H3Y140_PHODC; transcription factor MYB52-like isoform X1
STRING	XP_008791853.1	1e-126	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	8e-66	myb domain protein 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226] Shi D, et al. MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage. Plant Physiol., 2018. 176(4): p. 2737-2749 [PMID:29440562]