PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1067671g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 67aa MW: 7661.93 Da PI: 10.5411

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1067671g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.6	1.4e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaevavi+fs++gklyeys+ PDK_30s1067671g004 9 KRIENKINRQVTFSKRRSGMLKKAHEISVLCDAEVAVIVFSTKGKLYEYST 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.282	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.9E-40	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-29	2	65	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.07E-36	2	66	No hit	No description
PRINTS	PR00404	4.9E-32	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.7E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-32	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGMLK KAHEISVLCD AEVAVIVFST KGKLYEYSTD 60 ASQEVLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-20	1	67	1	67	MEF2C
5f28_B	1e-20	1	67	1	67	MEF2C
5f28_C	1e-20	1	67	1	67	MEF2C
5f28_D	1e-20	1	67	1	67	MEF2C
6byy_A	2e-20	1	67	1	67	MEF2 CHIMERA
6byy_B	2e-20	1	67	1	67	MEF2 CHIMERA
6byy_C	2e-20	1	67	1	67	MEF2 CHIMERA
6byy_D	2e-20	1	67	1	67	MEF2 CHIMERA
6bz1_A	2e-20	1	67	1	67	MEF2 CHIMERA
6bz1_B	2e-20	1	67	1	67	MEF2 CHIMERA
6bz1_C	2e-20	1	67	1	67	MEF2 CHIMERA
6bz1_D	2e-20	1	67	1	67	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF411842	2e-80	AF411842.1 Elaeis guineensis MADS box transcription factor (SQUA3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785630.1	6e-38	truncated transcription factor CAULIFLOWER A isoform X1
Refseq	XP_008785631.1	4e-38	truncated transcription factor CAULIFLOWER D isoform X2
Swissprot	Q6E6S7	2e-35	AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBL	A0A2H3XLL4	1e-36	A0A2H3XLL4_PHODC; truncated transcription factor CAULIFLOWER A isoform X1
TrEMBL	A0A2H3XLN8	9e-37	A0A2H3XLN8_PHODC; truncated transcription factor CAULIFLOWER D isoform X2
STRING	XP_008785630.1	2e-37	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	1e-37	AGAMOUS-like 8

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]