PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1069811g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 389aa    MW: 42861.2 Da    PI: 9.359
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1069811g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-103463811952
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrR 52 
                         Fe   ++yp+ ++++ LAk++gLt +qV++WF N R
  PDK_30s1069811g006 346 FEHflHPYPTDTDKQMLAKQTGLTRNQVSNWFINAR 381
                         554459****************************98 PP
2BELL83.92e-27209281372
                BELL   3 qelqkkkakLlsllee...VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +e q kk+ L+s+l+e   V+++Ykqy++q+q+vi sFe vagl  a+pY+s+Al+++ +hFrcLk +i++q+
  PDK_30s1069811g006 209 TEQQWKKTSLVSMLDEgtiVYRKYKQYYQQVQAVITSFESVAGLRIAAPYASMALRTMLKHFRCLKKKISNQL 281
                         58899**********9888***************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-32139279IPR006563POX domain
PfamPF075263.1E-32144278IPR006563POX domain
PROSITE profilePS5007111.143324381IPR001356Homeobox domain
SMARTSM003890.001327385IPR001356Homeobox domain
CDDcd000867.56E-12327381No hitNo description
SuperFamilySSF466891.84E-14329381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-24330381IPR009057Homeodomain-like
PfamPF059203.1E-18344381IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MSSSAAEGYV GGGGGGQEHL LHHHHQMYHV PQHSRREKLR FPPEESPPST SLFFLHHDPS  60
SLTTFLPPSS SSSSYYYNPQ NPNYSPSPTT QFSGHQISHQ GFSLSLASSS SKPAPLSSPR  120
HQFTIGPAPR TAEPFGPFTG YAAVLNRSRF LEPARQLLEE ICDAGRRQGL SGGGGGMLLD  180
ADPPELSSLD HHKMEGLAGG EVEGRISGTE QQWKKTSLVS MLDEGTIVYR KYKQYYQQVQ  240
AVITSFESVA GLRIAAPYAS MALRTMLKHF RCLKKKISNQ LSYANKVLRS TEGLSREESS  300
SFGLISCGVG LQRAPNDSGT FGQANIWRPQ RGLPERAVSV LRAWLFEHFL HPYPTDTDKQ  360
MLAKQTGLTR NQVSNWFINA RGCVDVSVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-14328381862Homeobox protein PKNOX1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008801354.10.0BEL1-like homeodomain protein 9
SwissprotQ9LZM84e-66BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2H3YNA10.0A0A2H3YNA1_PHODC; BEL1-like homeodomain protein 9
STRINGXP_008801354.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-57TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]