PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1070141g016

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 250aa MW: 29242 Da PI: 5.4792

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1070141g016	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	8.1e-18	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v ++G ++W+ Ia+ g++Rt+k+c++rw +yl PDK_30s1070141g016 10 KGPWTEQEDQQLVCFVGLFGERRWDFIAKVSGLNRTGKSCRLRWVNYL 57 79********************************************97 PP
2	Myb_DNA-binding	51.7	2e-16	63	108	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T +E+ l+++++ ++G++ W++Iar+++ gRt++++k++w++++ PDK_30s1070141g016 63 RGRMTLQEQRLILELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.529	5	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.8E-29	9	104	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-16	9	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	10	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.0E-20	11	64	IPR009057	Homeodomain-like
CDD	cd00167	6.91E-11	12	57	No hit	No description
PROSITE profile	PS51294	21.117	62	112	IPR017930	Myb domain
SMART	SM00717	2.0E-15	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-14	63	107	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-22	65	111	IPR009057	Homeodomain-like
CDD	cd00167	8.77E-10	65	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MVTVKEETRK GPWTEQEDQQ LVCFVGLFGE RRWDFIAKVS GLNRTGKSCR LRWVNYLHPG 60 LKRGRMTLQE QRLILELHSR WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK KAQERKRDAI 120 SPSWSSSSLA YHSPSPSEPP PEVGLEQREL NEVGVCCCMT AGFDEEEEDV KGYSMDQIWN 180 EIATPEAVSG LSFEECKNEV CDTSWPPMPS PMWEYSSEPL WKMDDEEFKM FPPVDDLLVS 240 NYQHGREFCT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-29	10	112	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-28	10	112	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-28	10	112	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	8e-29	10	112	4	105	C-Myb DNA-Binding Domain
1msf_C	8e-29	10	112	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776389.1	0.0	myb-related protein MYBAS2-like
Swissprot	Q4JL76	1e-89	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	A0A2H3X099	0.0	A0A2H3X099_PHODC; myb-related protein MYBAS2-like
STRING	XP_008776389.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	6e-80	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]