PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1071051g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family B3
Protein Properties Length: 277aa    MW: 32585.7 Da    PI: 10.1173
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1071051g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.2e-17251081298
                         HTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3  12 ksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++rl +p +f++ +   +   e+    +l+++ g+sW+vk+   ++ + +++++GW++F+ a++L +g  +vFk++g++ef  +v++f+
  PDK_30s1071051g005  25 FLDRLHIPHDFMR-YvirE-RVEKANNAVLRSPLGKSWDVKV--HGSFKDMYFGEGWQDFAVAHDLSVGFLLVFKYKGNMEF--KVTIFD 108
                         4689********5.55964.4456779***************..999999****************************9999..999987 PP
2B347.43.4e-15179277399
                         EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                  B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                         k+ +++++lk+   l +p  f ++++++++  ++++l+d++ + W v+l + +++++   + +++GW+eF   n+LkegD+++F+ + + +
  PDK_30s1071051g005 179 KAIIKHYNLKLkPYLNVPSIFQASYSLSSK--RQVILRDPQWQLWPVRLYH-RRRNAtvqTHFGSGWREFHVYNNLKEGDTCIFEIIPEeQ 266
                         66677777777446899****99**88854..47***************44.333332568899*********************995558 PP

                         EE..EEEEE-S CS
                  B3  89 efelvvkvfrk 99 
                         +  ++v++frk
  PDK_30s1071051g005 267 NDIMHVHIFRK 277
                         8889****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.37E-2213117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-2114112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.32414110IPR003340B3 DNA binding domain
CDDcd100171.47E-2017108No hitNo description
SMARTSM010191.1E-1817110IPR003340B3 DNA binding domain
PfamPF023623.4E-1426108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-20176276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-18176276IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-14176276No hitNo description
PROSITE profilePS5086312.985178277IPR003340B3 DNA binding domain
SMARTSM010192.4E-5178277IPR003340B3 DNA binding domain
PfamPF023623.0E-12181277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSNNKKPKQE GQNRMEFFKI LLPGFLDRLH IPHDFMRYVI RERVEKANNA VLRSPLGKSW  60
DVKVHGSFKD MYFGEGWQDF AVAHDLSVGF LLVFKYKGNM EFKVTIFDLS ACKKEYNHFH  120
ANCSSDIGRR HIPGPSEQLI AEQKKFIAYL NKQVAIGDLK PVKKVYETRS CCSLGPHFKA  180
IIKHYNLKLK PYLNVPSIFQ ASYSLSSKRQ VILRDPQWQL WPVRLYHRRR NATVQTHFGS  240
GWREFHVYNN LKEGDTCIFE IIPEEQNDIM HVHIFRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017699758.20.0B3 domain-containing protein Os03g0212300-like
TrEMBLA0A2H3ZUD90.0A0A2H3ZUD9_PHODC; B3 domain-containing protein Os03g0212300-like
STRINGXP_008798035.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-25B3 family protein