PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1072191g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 223aa    MW: 25642.9 Da    PI: 7.1303
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1072191g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.6e-081571902154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp+++++++L +++gL+ +q+ +WF N+R +
  PDK_30s1072191g002 157 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 190
                         469*****************************87 PP
2ELK28.63.2e-10111132122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  PDK_30s1072191g002 111 ELKHELRQGYKEKIVDIREEIL 132
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012568.0E-26253IPR005541KNOX2
PfamPF037911.1E-20252IPR005541KNOX2
PROSITE profilePS512139.987111131IPR005539ELK domain
PfamPF037891.7E-6111132IPR005539ELK domain
SMARTSM011880.0011111132IPR005539ELK domain
PROSITE profilePS5007111.531131194IPR001356Homeobox domain
SMARTSM003896.2E-11133198IPR001356Homeobox domain
SuperFamilySSF466893.81E-16133198IPR009057Homeodomain-like
CDDcd000864.76E-11134195No hitNo description
Gene3DG3DSA:1.10.10.602.1E-25138195IPR009057Homeodomain-like
PfamPF059201.2E-17151190IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MLGDDKELDQ FMTHYVLLLC SFKEQLQQHV RVHAMEAVMA CWELEQSLQS LTGVSPGEGT  60
GATMSDDDED QADSDTNLFD GSLGDGIDSM GFGPLIPTET ERSLMDRVRQ ELKHELRQGY  120
KEKIVDIREE ILRKRRAGKL PGDTTSTLKA WWQSHSKWPY PTEDDKARLV QETGLQLKQI  180
NNWFINQRKR NWHNNPSSSS TLKSKRKRCG NSKLPYLKKV NFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13134198872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187207RKRNWHNNPSSSSTLKSKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN2032491e-148JN203249.1 Elaeis guineensis putative knotted-like homeodomain protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802008.11e-153homeobox protein knotted-1-like 13 isoform X2
RefseqXP_008802011.11e-153homeobox protein knotted-1-like 13 isoform X3
SwissprotP480001e-134KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2H3YPV61e-152A0A2H3YPV6_PHODC; homeobox protein knotted-1-like 13 isoform X3
TrEMBLA0A2H3YQK31e-151A0A2H3YQK3_PHODC; homeobox protein knotted-1-like 13 isoform X2
STRINGXP_008802008.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-124KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]