PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1074091g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 475aa MW: 52581.4 Da PI: 6.4417

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1074091g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	108.4	4.7e-34	190	275	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+ +++r++++ k+plWee+s+ m++ gf+rs+k+Ckekwen+nk++kk+ke++kkr e+s+tcpyf+ql+a PDK_30s1074091g002 190 RWPKAEVHALINLRSGLDSRYQETGPKGPLWEEISAEMHRLGFNRSAKRCKEKWENINKYFKKVKESSKKR-TEDSKTCPYFHQLDA 275 8*******************************************************************9.57788******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.259	183	247	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.5E-4	187	246	IPR009057	Homeodomain-like
Pfam	PF13837	1.6E-23	189	276	No hit	No description
CDD	cd12203	2.25E-29	189	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MAFCEGLMKQ VMERQEAMQQ RFLEAIEKRE QDRMIREEAW RRQEMTRSSL RSAPWPRPVT 60 PLSLPTSKRS AARRSSCRPS PLLLQLPTMP AATAITLAPP PQQPSAAPPP APPQQQPQQP 120 QSQQQQHQKP RTLMQPSQQQ QQQQQQELHQ HHHSIEIGRH QVSPSSELVP VPEPQEPVGT 180 VSFEPVSSSR WPKAEVHALI NLRSGLDSRY QETGPKGPLW EEISAEMHRL GFNRSAKRCK 240 EKWENINKYF KKVKESSKKR TEDSKTCPYF HQLDALYRKK LLGSGGGGSS SSGGSALGIQ 300 KQQEQEANPN PNPNPQERSD VPTIMAPPQA PPPQPPPQQP PAETESKKGN NNGGNSEGGG 360 GSRAIQMQTS NGGLPPSFFE EGGSSGGGTK MKKPEDIVKE LMDQRQQQAA LEDYDKMEEP 420 DSDNIDQDDD DEDDEDDEDG KMQYKIQFQR PSVGGGGGTA STASATSGSF LAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MAFCEGLMKQ VMERQEAMQQ RFLEAIEKRE QDRMIREEAW RRQEMTRSSL RSAPWPRPVT  60
PLSLPTSKRS AARRSSCRPS PLLLQLPTMP AATAITLAPP PQQPSAAPPP APPQQQPQQP  120
QSQQQQHQKP RTLMQPSQQQ QQQQQQELHQ HHHSIEIGRH QVSPSSELVP VPEPQEPVGT  180
VSFEPVSSSR WPKAEVHALI NLRSGLDSRY QETGPKGPLW EEISAEMHRL GFNRSAKRCK  240
EKWENINKYF KKVKESSKKR TEDSKTCPYF HQLDALYRKK LLGSGGGGSS SSGGSALGIQ  300
KQQEQEANPN PNPNPQERSD VPTIMAPPQA PPPQPPPQQP PAETESKKGN NNGGNSEGGG  360
GSRAIQMQTS NGGLPPSFFE EGGSSGGGTK MKKPEDIVKE LMDQRQQQAA LEDYDKMEEP  420
DSDNIDQDDD DEDDEDDEDG KMQYKIQFQR PSVGGGGGTA STASATSGSF LAMVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008810715.1	0.0	trihelix transcription factor GTL1-like
TrEMBL	A0A2H3ZAT8	0.0	A0A2H3ZAT8_PHODC; trihelix transcription factor GTL1-like
STRING	XP_008810715.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	2e-40	Trihelix family protein