PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1074861g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WOX
Protein Properties Length: 250aa    MW: 27641.6 Da    PI: 6.4327
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1074861g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.5e-201877357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        +R+++tkeq+ +Le ++++  r+psae+++++++ l    +++ ++V++WFqN++a++++
  PDK_30s1074861g001 18 SRWSPTKEQIAILEGFYRQgMRTPSAEQIQQITSLLreygSIEGKNVFYWFQNHKARQRQ 77
                        7*****************99**************************************97 PP
2Wus_type_Homeobox114.55.2e-371679265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        + +RW+Pt+eQi iLe  y++G+rtP++e+iq+it+ L+eyG ie+kNVfyWFQN+kaR+rqkq
  PDK_30s1074861g001 16 SASRWSPTKEQIAILEGFYRQGMRTPSAEQIQQITSLLREYGSIEGKNVFYWFQNHKARQRQKQ 79
                        579***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.5E-131185IPR009057Homeodomain-like
PROSITE profilePS5007111.0621378IPR001356Homeobox domain
SMARTSM003891.4E-61582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-81877IPR009057Homeodomain-like
PfamPF000469.5E-181877IPR001356Homeobox domain
CDDcd000868.72E-62379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEECKGSASA SPPSSSASRW SPTKEQIAIL EGFYRQGMRT PSAEQIQQIT SLLREYGSIE  60
GKNVFYWFQN HKARQRQKQK QESFASYSPL LHLQAPPAPV LSPPPPPTCT NVVRGPYYFP  120
VPQVGGVGWH QPQFPSIFLP GAGNMKPRPE FQVNQERIPQ ACSNSHHRAY HYDHLATGTD  180
HSDVGHADMN GPHETLQLFP LHPTGTLEER SGSTLTSASA EAESVDDGEE EVGGESQPPF  240
DFFSAPKKPY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778011.11e-161WUSCHEL-related homeobox 5-like
TrEMBLA0A2H3X4421e-159A0A2H3X442_PHODC; WUSCHEL-related homeobox 5-like
STRINGXP_008778011.11e-160(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.16e-31WUSCHEL related homeobox 2