PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1075031g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 224aa    MW: 25887.5 Da    PI: 9.1828
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1075031g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.35e-2611020941128
                 NAM  41 kvePwdLpk...........kvkaeek...ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkge 117
                         + +P  L+            ++  +e+   +wyf ++r +kya+g+r+nr++ sgyWkatg+d++++s+kg+++g+kk+L+fy g++p g+
  PDK_30s1075031g002 110 EPHPTYLHIiidtetlnfaeRY--DEQfggNWYFLTPRYRKYAHGSRPNRSAGSGYWKATGSDTDIISRKGKKMGVKKSLTFYLGEQPGGT 198
                         3466666533445544433222..2334569************************************************************ PP

                 NAM 118 ktdWvmheyrl 128
                         kt W+m+eyr+
  PDK_30s1075031g002 199 KTIWLMDEYRI 209
                         *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.19482224IPR003441NAC domain
PfamPF023658.7E-1397209IPR003441NAC domain
SuperFamilySSF1019412.09E-26120211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEGRRKVVVA ALQFACSDSV SDNVATAERL KARLVAKSYS QIYGLDYSET LSCNVKNVFL  60
HGDLQEDVYM EQPPRKKGVK HFLELCCFFE KEKTEKQRKL RKKIPAIYDE PHPTYLHIII  120
DTETLNFAER YDEQFGGNWY FLTPRYRKYA HGSRPNRSAG SGYWKATGSD TDIISRKGKK  180
MGVKKSLTFY LGEQPGGTKT IWLMDEYRID EFQQPINPES MLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-2713921173144NO APICAL MERISTEM PROTEIN
1ut4_B7e-2713921173144NO APICAL MERISTEM PROTEIN
1ut7_A7e-2713921173144NO APICAL MERISTEM PROTEIN
1ut7_B7e-2713921173144NO APICAL MERISTEM PROTEIN
3swm_A7e-2713921176147NAC domain-containing protein 19
3swm_B7e-2713921176147NAC domain-containing protein 19
3swm_C7e-2713921176147NAC domain-containing protein 19
3swm_D7e-2713921176147NAC domain-containing protein 19
3swp_A7e-2713921176147NAC domain-containing protein 19
3swp_B7e-2713921176147NAC domain-containing protein 19
3swp_C7e-2713921176147NAC domain-containing protein 19
3swp_D7e-2713921176147NAC domain-containing protein 19
4dul_A7e-2713921173144NAC domain-containing protein 19
4dul_B7e-2713921173144NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131302130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52890.14e-28NAC domain containing protein 19