PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1078511g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 185aa    MW: 20290.3 Da    PI: 4.8252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1078511g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.64.7e-27666259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                        dDgy+WrKYGqKe+ gs+fprsYYrCt++   gC++kk+v+r ++dp + e++Y g+H ++
  PDK_30s1078511g002  6 DDGYTWRKYGQKEILGSKFPRSYYRCTHKsyyGCEAKKQVQRLDDDPYTYEVKYCGTHSCQ 66
                        8***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-25467IPR003657WRKY domain
SuperFamilySSF1182901.44E-24467IPR003657WRKY domain
SMARTSM007741.5E-34567IPR003657WRKY domain
PfamPF031066.0E-25666IPR003657WRKY domain
PROSITE profilePS5081121.712668IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEIPPDDGYT WRKYGQKEIL GSKFPRSYYR CTHKSYYGCE AKKQVQRLDD DPYTYEVKYC  60
GTHSCQTSTA PLLIPSMAPT NDNSSSNPQG EALMPEAPAQ PHSSLLASTE LGIWFSREFE  120
HGQRETQPLI VPHGGEGSST QAGPSHLQGG REVDCPVADL ADAMFNSGSS GSSMDAFFSQ  180
PSQDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20666969OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778512.11e-138WRKY transcription factor 55-like
TrEMBLA0A2H3X5781e-137A0A2H3X578_PHODC; WRKY transcription factor 55-like
STRINGXP_008778512.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-35WRKY DNA-binding protein 55