PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1080231g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 83aa    MW: 9404.62 Da    PI: 5.1968
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1080231g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.21.4e-115181131
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                        +g WT  Ed+llv+avkq+ g++Wk+Ia ++
  PDK_30s1080231g004 51 KGGWTDKEDDLLVEAVKQFNGKNWKKIATRI 81
                        688*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3184683IPR017930Myb domain
SuperFamilySSF466891.58E-74780IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-84880IPR009057Homeodomain-like
PfamPF002499.8E-95181IPR001005SANT/Myb domain
CDDcd001678.21E-75481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MVEEVKKEDR KDDRIQEISL PSCSPDSDCS CEMTPGTIPG RMSGPTRRST KGGWTDKEDD  60
LLVEAVKQFN GKNWKKIATR IEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017698696.11e-46transcriptional activator Myb-like isoform X1
RefseqXP_017698697.18e-47uncharacterized protein LOC103708649 isoform X2
TrEMBLA0A2H3ZQI22e-45A0A2H3ZQI2_PHODC; uncharacterized protein LOC103708649 isoform X2
TrEMBLA0A2H3ZRC93e-45A0A2H3ZRC9_PHODC; transcriptional activator Myb-like isoform X1
STRINGXP_008791902.12e-47(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4075322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.13e-14myb domain protein 3r2