PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1080341g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family FAR1
Protein Properties Length: 675aa    MW: 77651.9 Da    PI: 7.6677
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1080341g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.71.6e-2286176289
                FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                         fYn+YA ++GF +r+++s+++kr+g    ++++fvC keg+++++ ++ ++k++r+r + r gC a+++v ++  +kw+vtkl+leH+H +
  PDK_30s1080341g002  86 FYNAYALRIGFGIRVARSRSEKRKGveVLVMKRFVCLKEGHHKKKVTEyASKKKRKRLSIRDGCPAMMEVVRRGPDKWVVTKLVLEHTHVV 176
                         9*************99999886665226789***********9998887889999**********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2086177IPR004330FAR1 DNA binding domain
PfamPF105513.2E-30264355IPR018289MULE transposase domain
PROSITE profilePS5096610.559543579IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-9545577IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-6554581IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MEYSSSEDDE LVEDCMDLEE DIGASDVDQR TGEVTDSLHF GDQLCNSVVT VEHSVGNVLL  60
TTDGEVKNEE PYMGMVFDSD LSARAFYNAY ALRIGFGIRV ARSRSEKRKG VEVLVMKRFV  120
CLKEGHHKKK VTEYASKKKR KRLSIRDGCP AMMEVVRRGP DKWVVTKLVL EHTHVVVSPD  180
KVREIQLNHL SGKDREHENY LREVRQKIFG EGDAQGLLEY FKRMQAENSG FFYAVQVDYR  240
NCMTNVFWAD AKARMAYTYF GDAITFDTTY KKNENMMPFA AFMGVNHHGQ PVVFGCALVV  300
DKTESSFAWL FETWLTAMFG RRPLSFTTDQ GKAMEVAVAK VFPNTRHRLC RWHILSRCKK  360
KLSDVCTSYP SFYVELKKCV NESDTVDVFE VYWRSILDKY GLRENVWLQL LYNVRHKWVP  420
AYLKGSFYAE LSTTQKLESL NRFYRNNFDK KLSLHAFIAK FDQAMDCRFE KEAQEDLAVL  480
HDQRILKTDA PLEKQAANIY TRAVFEKFQV ELIEALDHYS VKIQDGAISK FSVERDGDAR  540
NRHIVFLNAS EKKACCSCSK FEFAGILCRH VLAVFLVTGV ILLPEHYILK RWTRKAKSGL  600
ILEDDRGVEF QNYCQSSPIL RYNDLVHDAM KCAEKGATSA ENYKIVKDIL QKAFAEIVAL  660
EENVAKAGPH HAENM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127141KKKVTEYASKKKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914954.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_010914955.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3Q0I2L40.0A0A3Q0I2L4_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_008792125.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-166FAR1-related sequence 5