PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1082161g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 245aa MW: 26976.2 Da PI: 7.253

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1082161g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.3	3.6e-05	137	174	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+e+Ik L PDK_30s1082161g001 137 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEHIKFL 174 67788899******998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.185	125	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.27E-5	135	178	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-7	135	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-11	135	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MLQEDPRSRA YFREEPSVES NQVHAVTGDS TTNLFKDMNQ SFLSEQQHLS AGNESRDAGV 60 SSYPLVPASY GCSSVMLQGL LEPDAKPQQS VYDNRLLNSE GVRDSCSSPS KKSGSSEPTS 120 KKPRIESPLP LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIEH IKFLHDQVGV 180 LSTPYLKNGH PMQHQQGSDK SKNGDGPKQD LRSRGLCLVP ISITYPMASE TTADFWHPTF 240 GGTFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777138.1	8e-94	transcription factor bHLH123-like
Swissprot	Q8GXT3	1e-52	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2H3X230	2e-92	A0A2H3X230_PHODC; transcription factor bHLH123-like
STRING	XP_008777138.1	3e-93	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2970	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	5e-50	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]