PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1082201g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 344aa    MW: 38679.9 Da    PI: 7.631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1082201g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-06175194120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C+ C+ksFsr  n++ H+
  PDK_30s1082201g001 175 FSCTVCNKSFSRYNNMQMHM 194
                         89*****************9 PP
2zf-C2H216.32.7e-05259281123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +Cgk+F  + + ++H +++
  PDK_30s1082201g001 259 FKCRKCGKPFAVRGDWRTHEKNC 281
                         89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.1E-6157198No hitNo description
PROSITE profilePS5015711.053175202IPR007087Zinc finger, C2H2
SMARTSM003550.088175197IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-6175194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SMARTSM00355230222254IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.16E-5245279No hitNo description
SMARTSM0035546259279IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
PGPACLDIKS TWTSILHPHL GDLEEEAFGS TGQRKYFMDA DLSLCFQSPP FLEWLKPPSS  60
SSSSSSSPSS SASPLAPECL PLLSRLEEPK KTIEEEDVII AKDISQEKIT VALNIGLPGA  120
SGELDEGTKP LNCKKEEEEE EEEEEMESSQ DWDSGSGKRF WIPTPAQILV GPVQFSCTVC  180
NKSFSRYNNM QMHMWGHGSE YRKGPDSLKG THPMAVLKLP CYCCAHGCKN NINHPRAKPL  240
KDFRTLQTHY KRKHGLKTFK CRKCGKPFAV RGDWRTHEKN CGKLWFCNCG SDFKHKRSLN  300
DHIRSFGNGH SHYLPPKIPE VEKECIIRFD AEVFAGKHRS TALN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813791.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-104ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A2H3ZHY30.0A0A2H3ZHY3_PHODC; zinc finger protein WIP3-like
STRINGXP_008813791.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-96WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]