PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1082541g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 229aa    MW: 26011.3 Da    PI: 10.7003
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1082541g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-124399155
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55
                        s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  PDK_30s1082541g001 43 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 99
                        78*******************433.44555535555.779999**************98 PP
2AP249.41.1e-15142193155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  PDK_30s1082541g001 142 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 193
                         78****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.91E-1743109No hitNo description
PfamPF008471.2E-94399IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1543109IPR016177DNA-binding domain
SMARTSM003801.4E-2244113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1344109IPR001471AP2/ERF domain
PROSITE profilePS5103217.33244107IPR001471AP2/ERF domain
PRINTSPR003676.9E-74556IPR001471AP2/ERF domain
CDDcd000184.85E-23142203No hitNo description
SuperFamilySSF541712.62E-18142203IPR016177DNA-binding domain
PfamPF008472.0E-10142193IPR001471AP2/ERF domain
PROSITE profilePS5103219.045143201IPR001471AP2/ERF domain
SMARTSM003809.6E-34143207IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-19143201IPR001471AP2/ERF domain
PRINTSPR003676.9E-7183203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVPVGSSAAA VAAANGPKFP NAKSTTREPI PRKSIETFGQ RTSQYRGVTR HRWTGRYEAH  60
LWDNSCRKEG QTRKGRQGGY DKEEKAARAY DLAALKYWGP TTHINFPLSA YEKELEEMKH  120
MTRQEFVAHL RRKSSGFSRG ASVYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA  180
AEAYDIAAIK FRGVNAVTNF DISKYDVKRI CSSSHLITVF QRRCRNLSV
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777425.11e-151AP2-like ethylene-responsive transcription factor ANT
SwissprotQ1PFE11e-124AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ84Z021e-121CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2H3X2R71e-150A0A2H3X2R7_PHODC; AP2-like ethylene-responsive transcription factor ANT
STRINGXP_008777425.11e-151(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-121AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  3. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]