PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1082861g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 457aa MW: 50275 Da PI: 8.4466

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1082861g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	56	76	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H PDK_30s1082861g001 56 CEICGKGFQRDQNLQLHRRGH 76 *******************88 PP
2	zf-C2H2	13.5	0.00021	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ PDK_30s1082861g001 130 WKCEKCSKRYAVQSDWKAHSKTC 152 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.9E-5	53	76	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.08E-7	53	76	No hit	No description
SMART	SM00355	0.076	54	76	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.489	54	76	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	56	76	IPR007087	Zinc finger, C2H2
SMART	SM00355	290	95	125	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.5E-4	118	151	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.08E-7	125	150	No hit	No description
SMART	SM00355	130	130	150	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MAGEAISNVF QLNPCRDPNT PPAVKKKRNL PGTPDPEAEV IALSPKALLA TNRFLCEICG 60 KGFQRDQNLQ LHRRGHNLPW KLRQKSTKEP RKRVYVCPEK SCIHHNPARA LGDLTGIKKH 120 FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGILFSRRDS FITHRAFCDA 180 LAEETARVSV VSGINHTMPI VNASYLLPDG LMRSDMLQNF SSNIKTDMSN CKADDKARPK 240 LPLWMDHGIQ SSEPLSSPTS LSDINQIGSM GAGTLYGDLF TSCSNSQHLN SELSWLYGSK 300 LLPSSSAVEL TSTSIPATTM KEVDSSQSLL ASIPSLFSAQ HHHCPAQASN MSATALLQKA 360 AQIGVTSTIP FIGSFEPSKC QDTQIEDASK YDGLLNPNQP SNLENVVSGF TASDPYNLFS 420 ERRCSSVKDD SGGGGETRDF LGVWVHPLCP SSINGWI

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MAGEAISNVF QLNPCRDPNT PPAVKKKRNL PGTPDPEAEV IALSPKALLA TNRFLCEICG  60
KGFQRDQNLQ LHRRGHNLPW KLRQKSTKEP RKRVYVCPEK SCIHHNPARA LGDLTGIKKH  120
FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK TCGTREYRCD CGILFSRRDS FITHRAFCDA  180
LAEETARVSV VSGINHTMPI VNASYLLPDG LMRSDMLQNF SSNIKTDMSN CKADDKARPK  240
LPLWMDHGIQ SSEPLSSPTS LSDINQIGSM GAGTLYGDLF TSCSNSQHLN SELSWLYGSK  300
LLPSSSAVEL TSTSIPATTM KEVDSSQSLL ASIPSLFSAQ HHHCPAQASN MSATALLQKA  360
AQIGVTSTIP FIGSFEPSKC QDTQIEDASK YDGLLNPNQP SNLENVVSGF TASDPYNLFS  420
ERRCSSVKDD SGGGGETRDF LGVWVHPLCP SSINGWI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-36	126	195	3	72	Zinc finger protein JACKDAW
5b3h_F	5e-36	126	195	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269\|PubMed:17785527, ECO:0000269\|PubMed:21935722, ECO:0000269\|PubMed:24821766, ECO:0000269\|PubMed:25829440}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269\|PubMed:21935722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008782073.1	0.0	zinc finger protein NUTCRACKER-like
Swissprot	Q9ZWA6	1e-128	IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBL	A0A2H3XD69	0.0	A0A2H3XD69_PHODC; zinc finger protein NUTCRACKER-like
STRING	XP_008782073.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-116	C2H2 family protein

Publications ? help Back to Top
Muñoz-Strale D,León G Identification of two highly specific pollen promoters using transcriptomic data. Plant Physiol. Biochem., 2014. 83: p. 292-9 [PMID:25208507] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]