PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1085711g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Whirly

Protein Properties

Length: 253aa MW: 28271.2 Da PI: 8.9809

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1085711g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	157	5.8e-49	52	165	1	114
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvr 91 s++k+kaal+v +v+ptf+ ldsg+ k++r+G +ll++++a+++rkyd ekkq falsate++ l++l++ esceffhdp++k+s eG+v+ PDK_30s1085711g001 52 SIFKGKAALTVSPVLPTFSRLDSGSSKVDRRGVVLLKFMPAIGQRKYDPEKKQLFALSATEIGCLISLGPAESCEFFHDPSMKSSLEGQVK 142 79*************************************************************************************** PP Whirly 92 kalkvePlpdGsGlfvnlsvtns 114 k+l+v P+p+G G+f+nls + + PDK_30s1085711g001 143 KTLSVSPVPNGEGYFFNLSGNGD 165 ****************98755 PP
2	Whirly	24.1	6.1e-08	183	213	109	139
Whirly 109 lsvtnslvkgnesfsvPvskaefavlrsllv 139 sv ns++k+n++fsvPv+kaefav+r +++ PDK_30s1085711g001 183 SSVMNSVQKTNDRFSVPVAKAEFAVVRAAFS 213 5899***********************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.30.31.10	2.2E-64	41	230	IPR009044	ssDNA-binding transcriptional regulator
SuperFamily	SSF54447	7.14E-60	44	253	IPR009044	ssDNA-binding transcriptional regulator
Pfam	PF08536	5.9E-46	53	165	IPR013742	Plant transcription factor
Pfam	PF08536	4.1E-4	184	210	IPR013742	Plant transcription factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005739	Cellular Component	mitochondrion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
NQLASKFLPE KNSNIKEASW FSNYSSRFGI STARSDSIKH GNYSGKTYAD FSIFKGKAAL 60 TVSPVLPTFS RLDSGSSKVD RRGVVLLKFM PAIGQRKYDP EKKQLFALSA TEIGCLISLG 120 PAESCEFFHD PSMKSSLEGQ VKKTLSVSPV PNGEGYFFNL SGNGDDGRVV VVMKIEMEEM 180 MYSSVMNSVQ KTNDRFSVPV AKAEFAVVRA AFSFILPYIM GWDQVVKPQL ESVEGERPKQ 240 REMRPDPDFE WER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3n1h_A	1e-67	41	231	5	172	StWhy2
3n1i_A	1e-67	41	231	5	172	protein StWhy2
3n1j_A	1e-67	41	231	5	172	Protein StWhy2
3n1k_A	1e-67	41	231	5	172	protein StWhy2
3n1l_A	1e-67	41	231	5	172	protein StWhy2
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Functional Description ? help Back to Top
Source	Description
UniProt	Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269\|PubMed:21911368}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008803798.1	1e-164	single-stranded DNA-binding protein WHY2, mitochondrial-like
Swissprot	D9J034	6e-70	WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBL	A0A2H3YU05	1e-163	A0A2H3YU05_PHODC; single-stranded DNA-binding protein WHY2, mitochondrial-like
STRING	XP_008803798.1	1e-163	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3012	38	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	1e-69	WHIRLY 2