PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1085741g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 520aa MW: 55071.7 Da PI: 6.1451

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1085741g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.7e-09	326	373	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PDK_30s1085741g001 326 SHSLAERVRREKISQRMRLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 373 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.14E-10	320	377	No hit	No description
SuperFamily	SSF47459	1.44E-16	320	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.434	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-16	322	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-6	326	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-10	328	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MNCGPPPDQL RPCFLNLNWE QSMDPTGHFE SALSSIVSSP SSNSPAPAEG LAVNNLVGRL 60 ASAYNSGEEI SPGSHYMGAP LNSPPKLNLF MMGCLGHPQP AIGGLPFSAN PVPVAHLDEL 120 SGDPGFTKRA ARLSCFDGRN YSGLAGQFGL PDAGNGKLLR ASSSQSLMAT GPQKGLPGSG 180 KAIRTQDGKQ LEANDAEFGN AREESSVLDP ILAGGEVSLR GAGENNPRKR KAAPKGKGKD 240 AALPNSAMDP PKAAEEEDPN AKKSRFAADD ATEKESINPK VEQYGSGSAS GDGGAQKQGK 300 ENNVKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISQ RMRLLQDLVP GCNKVTGKAV 360 MLDEIINYVQ SLQRQVEFLS MKLATANPRL DFNNVADLIP KDMHPTCGPV SNSVYPLETS 420 GAALSFANQP QQGAPLHCVV ANALETQCTV NPLDSTLCGT LGSHQPFING FGDASSQLGT 480 FWEDDLQSVV PMDLAQSQEI AVSSQSFHGP LPTAHMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MNCGPPPDQL RPCFLNLNWE QSMDPTGHFE SALSSIVSSP SSNSPAPAEG LAVNNLVGRL  60
ASAYNSGEEI SPGSHYMGAP LNSPPKLNLF MMGCLGHPQP AIGGLPFSAN PVPVAHLDEL  120
SGDPGFTKRA ARLSCFDGRN YSGLAGQFGL PDAGNGKLLR ASSSQSLMAT GPQKGLPGSG  180
KAIRTQDGKQ LEANDAEFGN AREESSVLDP ILAGGEVSLR GAGENNPRKR KAAPKGKGKD  240
AALPNSAMDP PKAAEEEDPN AKKSRFAADD ATEKESINPK VEQYGSGSAS GDGGAQKQGK  300
ENNVKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISQ RMRLLQDLVP GCNKVTGKAV  360
MLDEIINYVQ SLQRQVEFLS MKLATANPRL DFNNVADLIP KDMHPTCGPV SNSVYPLETS  420
GAALSFANQP QQGAPLHCVV ANALETQCTV NPLDSTLCGT LGSHQPFING FGDASSQLGT  480
FWEDDLQSVV PMDLAQSQEI AVSSQSFHGP LPTAHMKIEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010905158.1	0.0	transcription factor bHLH62
TrEMBL	A0A2H3Y3N0	0.0	A0A2H3Y3N0_PHODC; transcription factor bHLH62-like
STRING	XP_008799570.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-59	bHLH family protein