PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1086741g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family RAV
Protein Properties Length: 306aa    MW: 34028.6 Da    PI: 10.3564
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1086741g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.16e-102465148
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                        s+ykGV   + +grW A+I++      ++r++lg+f  + +Aa+a++a
  PDK_30s1086741g004 24 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEESQAARAYEA 65
                        78****9888.8*********3.....5**********88******87 PP
2B397.21.1e-30138237196
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f k  tpsdv+k++rlv+pk++ae+h     g+ ++++ l +ed sg+ W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F +++ 
  PDK_30s1086741g004 138 FSKPVTPSDVGKLNRLVIPKQHAEKHfplkFGSATTGMLLNFEDVSGKIWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDVVGFWRSRG 228
                         7899**************************6677899*************************************************98877 PP

                         SEE..EEEE CS
                  B3  88 sefelvvkv 96 
                          e++l++ +
  PDK_30s1086741g004 229 PEKQLYIDW 237
                         777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-102466IPR016177DNA-binding domain
PfamPF008479.8E-62465IPR001471AP2/ERF domain
CDDcd000184.45E-152469No hitNo description
PROSITE profilePS5103214.1572565IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-132565IPR001471AP2/ERF domain
SMARTSM003804.0E-152576IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-39136240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-31137238IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-29137231No hitNo description
PROSITE profilePS5086313.38138239IPR003340B3 DNA binding domain
PfamPF023622.6E-27138237IPR003340B3 DNA binding domain
SMARTSM010197.6E-26138241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGSVVLDPTP DMGFETESRK LPSSRYKGVV PQPNGRWGAQ IYEKHQRVWL GTFNEESQAA  60
RAYEAVTNFT PLSETDDDGA AELAFLASHS KAEIVDMMRK HTYCDELRQS KRAGKASRGT  120
VGKRNPPSSL GLARDLLFSK PVTPSDVGKL NRLVIPKQHA EKHFPLKFGS ATTGMLLNFE  180
DVSGKIWRFR YSYWNSSQSY VLTKGWSRFV KEKSLKAGDV VGFWRSRGPE KQLYIDWKPR  240
GVAADATVPR AGHLQVVRLF GVNIFRTPVG CGGGNGSGGD GKSGGERELF PPEQFVKKQR  300
VGALWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-5313525211130DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9979891e-39JX997989.1 Antirrhinum majus isolate B10.8.2.1 tempranillo (TEM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017696993.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-114RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A2H3ZLG20.0A0A2H3ZLG2_PHODC; AP2/ERF and B3 domain-containing transcription repressor RAV2-like
STRINGXP_008782355.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-116related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]