PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1089941g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 179aa MW: 19920.9 Da PI: 9.21

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1089941g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.2e-09	59	106	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq PDK_30s1089941g001 59 SHSLAERARREKINARMKLLQELVPGC----SKISGTALVLDEIINHVQSLQ 106 8*************************9....788889999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-15	53	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.65E-9	53	110	No hit	No description
PROSITE profile	PS50888	14.526	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-15	55	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	59	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-8	61	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MGHVPVFCNG IGFWKKVKGA AKKTKSAEEG SAKGAEENTA GEKLPYVHVR ARRGQATDSH 60 SLAERARREK INARMKLLQE LVPGCSKISG TALVLDEIIN HVQSLQRQVE LLSMRLAAVH 120 PRIDFRGLDS FLSAEGQFFG PFTAPVAFIR HIMKDEFEFY LEFEEFTSVF SILGPVLST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008787270.1	1e-78	transcription factor bHLH48-like isoform X4
Refseq	XP_008787271.1	1e-78	transcription factor bHLH48-like isoform X5
Swissprot	Q8VZ02	2e-51	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A2H3XQH1	3e-77	A0A2H3XQH1_PHODC; transcription factor bHLH48-like isoform X5
TrEMBL	A0A2H3XQM3	3e-77	A0A2H3XQM3_PHODC; transcription factor bHLH48-like isoform X4
STRING	XP_008787267.1	2e-76	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	3e-53	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]