PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1091161g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23931.7 Da    PI: 9.3597
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1091161g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.61.2e-161150342
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                        i ++  r++++ kR++g+lKK +ELS+LCd++++ ii+++
  PDK_30s1091161g001 11 IADDAARKTSLKKRKKGLLKKVQELSILCDVDACAIIYGP 50
                        788999********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.36E-17157IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-15160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.39149IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-8323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSRTSMKLQL IADDAARKTS LKKRKKGLLK KVQELSILCD VDACAIIYGP GERSPEKQKM  60
MNQEEFLYQK MRKLVDQLHK QEFENREMEK KLKMYEALRT GNFNDLDIEQ AISLSMMIEM  120
KLKKIYEKMD AIRKHQEMAW VDGAVQEGGN SAGLNAPWEN NPTEQGREIL QRQKQMMDTM  180
ILARTNETNQ PSPGPANPWM ASFFPSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010914731.11e-100agamous-like MADS-box protein AGL80
TrEMBLA0A2H4A1E81e-63A0A2H4A1E8_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008812533.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5075522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-16AGAMOUS-like 80