PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1092571g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 126aa    MW: 14570.5 Da    PI: 8.4615
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1092571g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS50.14.9e-161124266374
                GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse..............kaakqaklllr 342
                         a+fd l++ + r++++r+  E  +l + i++++a+eg+er+ rh   + Wr+ +++ G+ + +++e                  qa+ll +
  PDK_30s1092571g001   1 AFFDYLASFMDRDDKTRVATEGSFLWQGIRSIIAAEGSERVVRHVGISVWRSFFSRYGLVKTEMNEwshyyglvetemneWSHYQASLLGK 91 
                         68******************************************************99987765431111111111110044569999999 PP

                GRAS 343 kvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +++ ++  +++++ ++l+lgWk+ pL+++SaW+
  PDK_30s1092571g001  92 QFAnGHFCTLDKNGKALTLGWKGTPLLFLSAWK 124
                         999444467788888889**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.7E-131124IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
AFFDYLASFM DRDDKTRVAT EGSFLWQGIR SIIAAEGSER VVRHVGISVW RSFFSRYGLV  60
KTEMNEWSHY YGLVETEMNE WSHYQASLLG KQFANGHFCT LDKNGKALTL GWKGTPLLFL  120
SAWKFQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808707.26e-73DELLA protein RGL1-like
TrEMBLA0A2H3Z6351e-71A0A2H3Z635_PHODC; DELLA protein RGL1-like
STRINGXP_008808707.12e-72(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP172223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-10GRAS family protein