PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1092891g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 202aa MW: 21867 Da PI: 8.7227

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1092891g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.4	3.7e-41	38	137	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++p+ +r da++slvyeA +r+rdPvyG++g i++lqq+++ l+ PDK_30s1092891g001 38 PCAACKHLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPTAQRADAANSLVYEASVRLRDPVYGCMGAISALQQKVQALE 128 7**************************************************************************************** PP DUF260 92 aelallkee 100 ael+++++e PDK_30s1092891g001 129 AELQRARAE 137 **99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.246	37	138	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-41	38	135	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:1.20.58.60	7.8E-4	89	149	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MSTERERFDE VGKKIKREAD GATDPMGSPV GTLNIITPCA ACKHLRRRCA QECPFSPYFS 60 PHEPQKFASV HKVFGASNVS KMLMEVPTAQ RADAANSLVY EASVRLRDPV YGCMGAISAL 120 QQKVQALEAE LQRARAEILK LKYRQTSVQV LPASHAAFLA PVDVSVAAPP SIQTSPPPPA 180 SAASSSSFSI YINPNENVTY FG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	38	140	11	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	38	140	11	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008792197.1	1e-148	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	1e-74	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2H3Y2F6	1e-147	A0A2H3Y2F6_PHODC; LOB domain-containing protein 15-like
STRING	XP_008792197.1	1e-147	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-72	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]