PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1093591g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 362aa    MW: 40301.7 Da    PI: 6.7906
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1093591g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.8e-28124184158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         ldDgy+WrKYGqKe+ g+++pr+YYrCt++   gC+++k+v+rs+e+p v+++tY+g H++
  PDK_30s1093591g002 124 LDDGYSWRKYGQKEILGAKYPRGYYRCTHRntqGCTATKQVQRSDENPLVFDVTYHGAHTC 184
                         59***************************98889*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.779119182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.0E-28120184IPR003657WRKY domain
SuperFamilySSF1182904.58E-25123184IPR003657WRKY domain
SMARTSM007742.1E-41124186IPR003657WRKY domain
PfamPF031061.1E-26125184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEHRTGGDRS LLISELIQVQ ELVRQLEAHL DQPSPIEFCK SLARKILPSV EKSISLARMS  60
DSEGQKQLAG TESPRSATES PRSENSNQAF KDSDRKEMSK KRKTLPKRTS QVAVSPGAGV  120
EGPLDDGYSW RKYGQKEILG AKYPRGYYRC THRNTQGCTA TKQVQRSDEN PLVFDVTYHG  180
AHTCLQRFPS VPNSVSPYQE LKQSKPNFQE HAQQQQQQQQ QDHNLLLTFQ RDLKVKTQGS  240
DSDTHEYQSS LSFSFPSTPV SGIKAENHVF SSASTLDNGF MGSFSPSFLS PTTSESNYFS  300
VSPGCMSNYG GGLNLQKTES NLTEIIPAAT SATNSPLMDM DFLLEPLEFD PKFQLDASSF  360
YS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20124184868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791438.10.0probable WRKY transcription factor 53
TrEMBLA0A2H3Y0320.0A0A2H3Y032_PHODC; probable WRKY transcription factor 53
STRINGXP_008791438.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-44WRKY family protein