PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1094241g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Nin-like

Protein Properties

Length: 192aa MW: 21971.5 Da PI: 10.0278

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1094241g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.6	5.1e-28	48	98	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek +++e++s++F++pi++AAkeL+v++T+LKr+CR++GI+RWPhRk+ksl PDK_30s1094241g001 48 EKALTFEEVSRCFYMPITQAAKELNVGVTLLKRKCRKLGIPRWPHRKLKSL 98 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	37	119	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-22	51	98	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
APFSVFDGEN GFWDDMKCGT ENKEKALVCD GEKRGQKKMR KGERSREEKA LTFEEVSRCF 60 YMPITQAAKE LNVGVTLLKR KCRKLGIPRW PHRKLKSLQT LIKNVKEHGG EEGDVGDAQL 120 VTSATAILEQ ERKLMEKEPA MQLEEKTKRL RQACFKANYK KRRLAALEES QESASPDYIF 180 LQKAMMKIKS AA

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026658339.1	1e-136	protein RKD1-like
Swissprot	Q9FGD1	2e-39	RKD3_ARATH; Protein RKD3
TrEMBL	A0A3Q0HV38	1e-135	A0A3Q0HV38_PHODC; protein RKD1-like
STRING	XP_008787160.1	1e-135	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	8e-42	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]