PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1094661g007
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 223aa    MW: 25385 Da    PI: 9.8533
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1094661g007genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-056284123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F r  nL+ H r H
  PDK_30s1094661g007 62 YVCEVCSRGFQRDQNLQLHRRAH 84
                        9********************98 PP
2zf-C2H214.10.00014138160123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k++ + s++k H +++
  PDK_30s1094661g007 138 WRCEKCSKMYATESDMKAHFSRC 160
                         58*****************9887 PP
3zf-C2H220.99.3e-07165186122
                         EEETTTTEEESSHHHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                         ++C++Cg+ Fsrk +L  H+  
  PDK_30s1094661g007 165 FRCEKCGQEFSRKRSLLAHQEG 186
                         89*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.76E-66087No hitNo description
Gene3DG3DSA:3.30.160.609.2E-662107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.9466289IPR007087Zinc finger, C2H2
SMARTSM003550.0236284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM0035575103133IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.31E-6137184No hitNo description
SMARTSM0035554138158IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887165196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-4165184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.3165191IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSAYALATPF SAQSLPGEPS RDLTPQQQTA RPKRKRNGPG QPDPRAEVIS LSPEKLLATS  60
TYVCEVCSRG FQRDQNLQLH RRAHNLEGNL KKSGSSTNGK RVYVCPEPSC VHHDPSRALG  120
DITGIKKHYI RKHCERKWRC EKCSKMYATE SDMKAHFSRC SSGKFRCEKC GQEFSRKRSL  180
LAHQEGCNVA HREYNNLIPP YAVYSLIRCS LIRAAWQLWF AMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-11135193461Zinc finger protein JACKDAW
5b3h_F2e-11135193461Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008795394.21e-148zinc finger protein MAGPIE
SwissprotQ8GYC12e-65IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A2H3Y9B41e-146A0A2H3Y9B4_PHODC; zinc finger protein MAGPIE
STRINGXP_008795394.11e-129(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5079222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.17e-68indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]