PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1094891g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 247aa MW: 27511.4 Da PI: 7.5016

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1094891g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.5	1.6e-05	188	225	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L A+eYIk L PDK_30s1094891g003 188 RKEKLGDRIAALQQLVSPF-----GKTDTASVLLDAIEYIKCL 225 7788899*******998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.261	176	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-11	186	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.42E-5	186	229	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-7	190	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MADSFQKASP TLQPTPPRLP ETTLYEGKLM YDSGLMGGET HGGGRMSEMQ QWVSLPANDP 60 IVCTSSTSFL ETGDPSRAWN NEIFGRSSSY MSDWIAEAAP VQAIKEDNHR QHSVQPLHRF 120 SAKIPFSLLK NTEGGACPPF PLLNQSGHPL LRDNDRIKKP SPDNCSFSFR QKQLEKPITS 180 RITPLKVRKE KLGDRIAALQ QLVSPFGKTD TASVLLDAIE YIKCLHEQLT VLCSPYVKMS 240 YEITEMG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008803478.1	1e-163	transcription factor bHLH66-like isoform X1
TrEMBL	A0A2H3YT35	1e-162	A0A2H3YT35_PHODC; transcription factor bHLH66-like isoform X1
STRING	XP_008803478.1	1e-162	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP50868	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	5e-22	bHLH family protein