PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1100061g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 201aa    MW: 22198.2 Da    PI: 9.4245
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1100061g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-1966119356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+ +++keq + Lee F++n++++ +++e LA+kl+L  rqV vWFqNrRa+ k
  PDK_30s1100061g004  66 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTK 119
                         67789***********************************************98 PP
2HD-ZIP_I/II120.21.1e-3866147283
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                         kk+rlskeq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++e
  PDK_30s1100061g004  66 KKLRLSKEQSRLLEESFRQNHTLNPKQKEALAMKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQRE 147
                         9*******************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-1851119IPR009057Homeodomain-like
SuperFamilySSF466891.28E-1953122IPR009057Homeodomain-like
PROSITE profilePS5007117.15161121IPR001356Homeobox domain
SMARTSM003892.9E-1663125IPR001356Homeobox domain
CDDcd000862.24E-1564122No hitNo description
PfamPF000461.8E-1666119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
SMARTSM003401.3E-12121164IPR003106Leucine zipper, homeobox-associated
PfamPF021838.4E-7121147IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAGFGGSASG LELTIAVPGL RTSTGYEGGG CNVRELDINQ PASGAEEDFP MGSVEEEEEG  60
GTPRPKKLRL SKEQSRLLEE SFRQNHTLNP KQKEALAMKL KLRPRQVEVW FQNRRARTKL  120
KQTEMECEYL KRCFGSLTEE NRRLQREPMP ASALTMCPRC ERLTSTPRAV AASAASAATA  180
TTSLPSAFPF RPRRHPSSAA C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924194.11e-123LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX3
SwissprotQ0JKX13e-80HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH383e-80HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2H3ZUT21e-119A0A2H3ZUT2_PHODC; homeobox-leucine zipper protein HOX3
STRINGXP_008800935.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.19e-60homeobox-leucine zipper protein 17