PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1100871g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Trihelix

Protein Properties

Length: 302aa MW: 33710.5 Da PI: 4.4316

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1100871g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.7	1.3e-12	63	137	2	78
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 Wt +e l+L+ ++e+ ++ + ++W+ +s+++ + + rs++qCk kwe+l +y +i+++e++ +++ s PDK_30s1100871g001 63 WTTHEMLVLVSEIAAVDEDWVKALSSYQKWKMISDNCVAFDVIRSSNQCKRKWESLLADYWRIRDWESR--CGVGSY 137 *******************************************************************98..666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.2E-9	62	163	No hit	No description
PROSITE profile	PS50090	7.131	63	119	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MERTETPCIV QALPASNKKD KESLTKPVTV EDKESPLKLE STTNSPQTPS SSRFTRSQAA 60 PDWTTHEMLV LVSEIAAVDE DWVKALSSYQ KWKMISDNCV AFDVIRSSNQ CKRKWESLLA 120 DYWRIRDWES RCGVGSYWCL EGEKRKQFGL PALFDEEVFD SMDAVIKAQE TQSSSRDSDS 180 EGLVGTADVQ MADGDDDLGS GEKEPNETLT NTDKGRDMAM KLQEDAQHIH AILKGELEDS 240 SSQVRAPVDL TKPNAIETEF TRRQANELIK AFGSLVSTLN QFTELIKDGE CEGIKPVTST 300 AQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781712.1	0.0	uncharacterized protein LOC103701445 isoform X1
TrEMBL	A0A2H3XCL4	0.0	A0A2H3XCL4_PHODC; uncharacterized protein LOC103701445 isoform X1
STRING	XP_008781712.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6353	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	4e-43	sequence-specific DNA binding transcription factors