PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1100981g009

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

CPP

Protein Properties

Length: 152aa MW: 16368.7 Da PI: 9.1831

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1100981g009	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	54	3.3e-17	12	51	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e PDK_30s1100981g009 12 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNYE 51 589***********************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	20.591	1	52	IPR005172	CRC domain
SMART	SM01114	6.2E-20	12	53	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	2.4E-13	15	50	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MEEAGDLPLL GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNY EGSEERRALF 60 RGDHGNALYM QHAANAALNG AIGPSGFLSP STSKKRKNPE LFLSTSSKDQ PIHRLGQASH 120 LKTSGPAASF PSVPVARAVN PAPLGSSKVT YR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	9e-15	12	60	83	131	Protein lin-54 homolog
5fd3_B	9e-15	12	60	83	131	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008789327.1	1e-105	protein tesmin/TSO1-like CXC 5
Swissprot	Q9SL70	3e-52	TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBL	A0A2H3XVD4	1e-103	A0A2H3XVD4_PHODC; protein tesmin/TSO1-like CXC 5
STRING	XP_008789327.1	1e-104	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4730	36	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20110.1	1e-54	Tesmin/TSO1-like CXC domain-containing protein