PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1101201g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28332.5 Da    PI: 7.5323
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1101201g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.42.5e-251058250
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        rien+  rqvtf+kRr+g+lKKA+ELSvL+da++ +iifs++gklye +
  PDK_30s1101201g002 10 RIENSVHRQVTFCKRRAGLLKKAKELSVLTDADIGIIIFSTHGKLYELA 58
                        8*********************************************965 PP
2K-box311.1e-11981791786
               K-box  17 lqqelakLkkeienLq...........reqRhllGedL.esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                         ++qe++ Lk+ei+ Lq              R + G++  e+++l+eL+ Le++Le    +iRs+K+++++++i+ l++k  e
  PDK_30s1101201g002  98 SKQEISMLKQEINILQkclrvcmssknLGDRCMYGDGAsENMTLEELHALERHLEIWTYHIRSTKMQIMFQEIQSLKNKIVE 179
                         68999999999999994444443332212355667765368************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.4E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-26177IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.721161IPR002100Transcription factor, MADS-box
CDDcd002651.71E-37279No hitNo description
PRINTSPR004043.4E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.80995196IPR002487Transcription factor, K-box
PfamPF014863.4E-1398176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MARGKVQMRR IENSVHRQVT FCKRRAGLLK KAKELSVLTD ADIGIIIFST HGKLYELATR  60
GTMGGLIERY RKASGEAQTE GGEVNQEQVC NPIACIESKQ EISMLKQEIN ILQKCLRVCM  120
SSKNLGDRCM YGDGASENMT LEELHALERH LEIWTYHIRS TKMQIMFQEI QSLKNKIVEQ  180
NGHFDVAPML VQQNGHFDAS PMVVHQNGYF NVATAMDDIP YPLTIQNDYS RFTSSAWASP  240
TEDNMVGRTL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788359.11e-165MADS-box transcription factor 26-like
SwissprotA2YQK93e-77MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G83e-77MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A2H3XT111e-163A0A2H3XT11_PHODC; MADS-box transcription factor 26-like
STRINGXP_008788359.11e-164(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-52AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]