PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1103041g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB
Protein Properties Length: 292aa    MW: 32924.7 Da    PI: 5.4284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1103041g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.66.8e-193178148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEd++l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  PDK_30s1103041g001 31 RGPWTAEEDLILMNYIAAHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 78
                        89********************************************97 PP
2Myb_DNA-binding54.23.3e-1784127146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  PDK_30s1103041g001  84 RGNITPEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 127
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.9462678IPR017930Myb domain
SuperFamilySSF466891.19E-3128125IPR009057Homeodomain-like
SMARTSM007172.9E-153080IPR001005SANT/Myb domain
PfamPF002498.9E-173178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-243285IPR009057Homeodomain-like
CDDcd001671.33E-113378No hitNo description
PROSITE profilePS5129424.24879133IPR017930Myb domain
SMARTSM007171.6E-1583131IPR001005SANT/Myb domain
PfamPF002495.1E-1684127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2486132IPR009057Homeodomain-like
CDDcd001677.62E-1288127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEMGREVGGE VHGRTYSSAT PPSEEDMDLR RGPWTAEEDL ILMNYIAAHG EGRWNSLARC  60
AGLKRTGKSC RLRWLNYLRP DVRRGNITPE EQLLILELHS RWGNRWSKIA QHLPGRTDNE  120
IKNYWRTRVQ KHAKQLRCDV NSKQFKDVMR YLWMPRLIER IWAASGRSPA TVYQNVSVPM  180
AGDQPAEQGS ESGQVKPSPE TSSAAGSSSD SVGMQFSSPP PVPDCFADCS AGMQEGENKD  240
GDGIHDVQMG GWWPESLPSP GGYGNLGFPD FDQNAWDENL WSVEDIWLQQ QF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24281314106B-MYB
1h8a_C2e-242813124126MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781174.10.0transcription factor MYB2
TrEMBLA0A2H3XBB20.0A0A2H3XBB2_PHODC; transcription factor MYB2
STRINGXP_008781174.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.13e-85myb domain protein 78