PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1113561g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 157aa MW: 17545.6 Da PI: 8.0231

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1113561g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	25.6	3.5e-08	9	49	52	92
DUF260 52 eeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 ere+ +++l++eA++r dP +G+++ + +l+++ + l+ PDK_30s1113561g002 9 PERERCADTLMWEADWRSIDPANGCYNEVIRLKEENAMLRR 49 46999****************************99887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	7.3E-6	8	49	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MLKANDSIPE RERCADTLMW EADWRSIDPA NGCYNEVIRL KEENAMLRRV IRECGHCSRQ 60 PLPQPYRSPV PQPGRFWANG NNHNNNGGAN LIRRGINNNG GDVGGAMHLA EVVPQHMVNY 120 PLINNGNLIN GYHNPHPPIY MHQPGGQGNN GHGALYH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784488.1	1e-112	LOB domain-containing protein 2-like
TrEMBL	A0A2H3XIX7	1e-111	A0A2H3XIX7_PHODC; LOB domain-containing protein 2-like
STRING	XP_008784488.1	1e-111	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13044	28	33