PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1114141g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GRAS
Protein Properties Length: 146aa    MW: 16330.6 Da    PI: 8.0702
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1114141g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS181.46.3e-562145231374
                GRAS 231 vkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                         +++  Pk+v++ve+ea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+kvE+ ++++ei+n+va egaer++rhe+l++Wr+ +e 
  PDK_30s1114141g001   2 IRDQAPKIVTLVEHEASHNGPYFLGRFLEALHYYSAIFDSLDATFPADSAARAKVEQYIFAPEIKNIVASEGAERVARHERLGRWRKVMEG 92 
                         78889************************************************************************************** PP

                GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          GFk v+ls + ++q + ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  PDK_30s1114141g001  93 RGFKGVALSANSVNQSRILLGLYACDGYRLTEDNGCLLLGWQDRAIIAASAWR 145
                         ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.2291125IPR005202Transcription factor GRAS
PfamPF035142.2E-532145IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MIRDQAPKIV TLVEHEASHN GPYFLGRFLE ALHYYSAIFD SLDATFPADS AARAKVEQYI  60
FAPEIKNIVA SEGAERVARH ERLGRWRKVM EGRGFKGVAL SANSVNQSRI LLGLYACDGY  120
RLTEDNGCLL LGWQDRAIIA ASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-401144237378Protein SCARECROW
5b3h_A1e-401144236377Protein SCARECROW
5b3h_D1e-401144236377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026660807.11e-100DELLA protein RGL1-like
SwissprotG7L1669e-90RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A3Q0I5S59e-99A0A3Q0I5S5_PHODC; DELLA protein RGL1-like
STRINGXP_008791129.11e-99(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-42RGA-like 2
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]