PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1116821g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 187aa    MW: 20706.3 Da    PI: 7.4526
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1116821g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-1171118455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  PDK_30s1116821g001  71 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 118
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.35E-1165122No hitNo description
SuperFamilySSF474591.83E-1865135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.22167117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-1967137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-971118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1173123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MTGRVGHGQT DSEVKCLKVI KSTNESSNLK MEAEASSGTC NKTMDQNPPP TESAKQDYIH  60
VRARRGQATD SHSLAERARR EKISERMKIL QDLVPGCNKV IGKASVLDEI INYIQALQRQ  120
VEFLSMKLEA INSRINAGIE GFPLKDFGAQ TYDTTSSLAF NTQPAREYGQ GSVTEWLHMQ  180
CIGNISD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808720.11e-126transcription factor BHLH089-like isoform X1
SwissprotQ84T084e-85BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A2H3Z5L81e-125A0A2H3Z5L8_PHODC; transcription factor BHLH089-like isoform X1
STRINGXP_008808720.11e-125(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.18e-70BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]