PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1125291g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

G2-like

Protein Properties

Length: 257aa MW: 28834.8 Da PI: 6.611

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1125291g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.3	1.1e-30	59	114	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsek..AtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+++ AtPk +l+lm+vkgL+++hvkSHLQ+YR+ PDK_30s1125291g001 59 PRLRWTPELHLCFVHAVERLGGQDRagATPKMVLQLMNVKGLSIAHVKSHLQMYRS 114 9*********************9445*************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.666	55	117	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-29	55	115	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.14E-15	56	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.9E-22	58	116	IPR006447	Myb domain, plants
Pfam	PF00249	8.9E-9	60	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGSMSSESSR KSLSKVDEVE EDGGNSLRYG GSSSNSTVEE SERKASSGAV RQYVRSKNPR 60 LRWTPELHLC FVHAVERLGG QDRAGATPKM VLQLMNVKGL SIAHVKSHLQ MYRSKKIDES 120 GQASHELYEA SRLHDYGLGT THYRPQERET YFITQIQERP ATNPQGQSSV RWKADDHGPD 180 LNLSLSIGPR QEKKQTWGEE EEEEEEVDSS LSLSLFSPSR IERCSGDVEK ASKHNRWEEE 240 VGKGKNARAT STLDLTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-17	60	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-17	60	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-17	60	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-17	60	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-17	60	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-17	60	116	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-17	60	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-17	60	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-17	60	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-17	60	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-17	60	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-17	60	116	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026664016.1	3e-71	probable transcription factor KAN4 isoform X1
TrEMBL	A0A3Q0IAJ9	7e-70	A0A3Q0IAJ9_PHODC; probable transcription factor KAN4 isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4408	36	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-40	G2-like family protein