PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1131521g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 468aa MW: 50830.5 Da PI: 9.1173

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1131521g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	59	81	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PDK_30s1131521g003 59 FVCEICNKGFQRDQNLQLHRRGH 81 89*******************88 PP
2	zf-C2H2	11.4	0.001	135	157	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + PDK_30s1131521g003 135 WKCDKCSKKYAVQSDWKAHNKIC 157 58*****************8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.26E-7	58	81	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-5	58	81	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	7.4E-5	59	81	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.017	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	59	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	290	100	130	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	7.26E-7	130	155	No hit	No description
SMART	SM00355	170	135	155	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MSNLTSASGE ASVSSNRQSS FASTTPNPVK KKRSLPGNPD PDAEVIALSP KTLMTTNRFV 60 CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVRKKVY ICPEVTCVHH DASRALGDLT 120 GIKKHFCRKH GEKRWKCDKC SKKYAVQSDW KAHNKICGTR EYRCNCGTLF SRRDSFITHR 180 AFCDALAEES ARAITAKPMA NHHPLPCSQP TAPHDLSTPY TSIHQAQFPH LMRTAEASTS 240 TASSQGLQEL SLKGEHQQQD FGIRREIPPW VACQGPGPPP DLPPSIYSPR LGPEFRNENQ 300 PPHPQLYQSS AATPHLSATA LLQKAAQMGA TMSRTPHTGQ ISAPRFGLGL PSHKEMCGGG 360 GGALVLEDMM MASMPSAPGL GGWSFEGALG GMLESKREGN GVEGLLRSHG RNEGGGGGGG 420 GASDGMTRDF LGLRAFSHGE ILSMAGLDPC MASSSYEQPP QNKEPWHG

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MSNLTSASGE ASVSSNRQSS FASTTPNPVK KKRSLPGNPD PDAEVIALSP KTLMTTNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR TNKEVRKKVY ICPEVTCVHH DASRALGDLT  120
GIKKHFCRKH GEKRWKCDKC SKKYAVQSDW KAHNKICGTR EYRCNCGTLF SRRDSFITHR  180
AFCDALAEES ARAITAKPMA NHHPLPCSQP TAPHDLSTPY TSIHQAQFPH LMRTAEASTS  240
TASSQGLQEL SLKGEHQQQD FGIRREIPPW VACQGPGPPP DLPPSIYSPR LGPEFRNENQ  300
PPHPQLYQSS AATPHLSATA LLQKAAQMGA TMSRTPHTGQ ISAPRFGLGL PSHKEMCGGG  360
GGALVLEDMM MASMPSAPGL GGWSFEGALG GMLESKREGN GVEGLLRSHG RNEGGGGGGG  420
GASDGMTRDF LGLRAFSHGE ILSMAGLDPC MASSSYEQPP QNKEPWHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-33	131	192	3	64	Zinc finger protein JACKDAW
5b3h_F	4e-33	131	192	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	97	KLKQRTNKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008795411.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-119	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	A0A2H3YA17	0.0	A0A2H3YA17_PHODC; protein indeterminate-domain 7-like
STRING	XP_008795411.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-119	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]