PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1133641g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 729aa    MW: 80727 Da    PI: 9.9059
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1133641g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.93.2e-14145179133
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                         C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ k
  PDK_30s1133641g001 145 CQNCGISEkmTPAMRRGPAGPRSLCNACGLMWANK 179
                         ********************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.3E-9439IPR010399Tify domain
PROSITE profilePS5132015.031439IPR010399Tify domain
PfamPF062007.7E-13638IPR010399Tify domain
PfamPF062031.8E-1473114IPR010402CCT domain
PROSITE profilePS5101713.09673115IPR010402CCT domain
SMARTSM004016.3E-6139192IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-8141184No hitNo description
CDDcd002027.82E-12144185No hitNo description
Gene3DG3DSA:3.30.50.103.3E-12144179IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440145172IPR000679Zinc finger, GATA-type
PfamPF003206.1E-12145179IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MPLINATSNQ LTLLFQGEVY VFDSVTPEKV QAVLLLLGGC EVPTGIAGMT LPCHQDDRGY  60
DDILRRTNIP AKRIASLIRF REKRKERNFD KKIRYNVRKE VALRMQRRKG QFAGKANPQE  120
GASASSSVHL AQSSTQDEPP RQSKCQNCGI SEKMTPAMRR GPAGPRSLCN ACGLMWANKT  180
YAHTRTGPQA IQGTLRSPSK VKMSSQSPAN PIEHGEAIDA ELGSDNKALV HTSNNHDSVV  240
VTTAEIVAEG IPAGGSQEME EDFKTELSTQ KHGQSEGSLR SSKPLPIFPL CKPGTLTQSS  300
GLSSKPYRMD KDRSSRKSRD DREKDGDSVK DHPDLEPRRE EKRHGSRNER HRDDDRRHGG  360
REDSPADLER RRERSTSRAR DSVERDRVSL EQSVERRHHL SSLRKRKEHE GDEEEWDKNG  420
KRVRVSDGVR EKKRERRRFE DRAVEDSSDL NGVYKEERVS KDRRKEGGLR AMEKDRDDNR  480
MKEEVMGDAE IKKPRKEGRR FSDSVEAGEK KDEDEPKAVD NKEVREEWRF KDRVKEENLG  540
TVDEAKTSVS SVNSKDESGN TQVVNGDQSR MAMEKSGSRR NVIAQEPLTV ASKVSISSAA  600
SYPFPTKVSS ITTTNENEGV SIRSDEVPGK SSTDGTATSV AGKSGSLSLD ALAKAKKALQ  660
MQKELAEKLK KLPTLNKVAG TSTENSKVVY NKDGPNIPPS GLGAPAGSSG SLTSASATPV  720
QAMPRLPVG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796632.10.0protein RDM16-like isoform X1
RefseqXP_026662366.10.0protein RDM16-like isoform X1
TrEMBLA0A2H3YCK30.0A0A2H3YCK3_PHODC; protein RDM16-like isoform X1
STRINGXP_008796632.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-58ZIM-like 1