PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1133891g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HD-ZIP

Protein Properties

Length: 234aa MW: 26094.4 Da PI: 7.7139

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1133891g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63	4.6e-20	90	145	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +rk+ ++tk+ql+ Le+ F+++++++ +++eLA++l+L rqV vWFqNrRa+ k PDK_30s1133891g002 90 KRKKLRLTKQQLTLLENSFQEHSTLNPPRKQELADQLNLRPRQVEVWFQNRRARTK 145 79999*************************************************98 PP
2	HD-ZIP_I/II	113.4	1.4e-36	91	179	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q++lLE+sF+e+++L+p rK+ela +L+l+prqv+vWFqnrRARtk+kq+E d e+L +++++l++en+rL++e eeL++ PDK_30s1133891g002 91 RKKLRLTKQQLTLLENSFQEHSTLNPPRKQELADQLNLRPRQVEVWFQNRRARTKSKQTELDREFLNKCCENLSNENQRLKRELEELKS 179 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-20	66	148	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.55E-21	76	149	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.852	87	147	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	89	151	IPR001356	Homeobox domain
CDD	cd00086	2.66E-18	90	148	No hit	No description
Pfam	PF00046	1.8E-17	90	145	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	122	145	IPR017970	Homeobox, conserved site
SMART	SM00340	7.4E-15	147	190	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MEEDECNVSL GLAIGGGGYS TSNQSRDGGR KPPVQFHILF PPRPKGEEEE EEPTIEERPA 60 NKSGSKNIDE EEDTSTNDVS GGVSCNQAGK RKKLRLTKQQ LTLLENSFQE HSTLNPPRKQ 120 ELADQLNLRP RQVEVWFQNR RARTKSKQTE LDREFLNKCC ENLSNENQRL KRELEELKSM 180 KPGCPFYVGI PKVATLTLCP SCERTMAAGG QKGIGALDVM KSLRVPVNNG LVGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARTKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781928.1	1e-140	homeobox-leucine zipper protein HAT22-like
Swissprot	P46665	2e-50	HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBL	A0A2H3XCX2	1e-138	A0A2H3XCX2_PHODC; homeobox-leucine zipper protein HAT22-like
STRING	XP_008781928.1	1e-139	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8130	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-45	homeobox from Arabidopsis thaliana