PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1140161g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 287aa MW: 31338.5 Da PI: 8.7433

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1140161g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.2	1.9e-13	73	119	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE+ ++ + ++lG+g+W+ I+r + +Rt+ q+ s+ qky PDK_30s1140161g002 73 RVPWTEEEHRMFLFGLQKLGKGDWRGISRNFVVTRTATQVASHAQKY 119 789*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	8.779	3	20	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	18.091	68	124	IPR017930	Myb domain
TIGRFAMs	TIGR01557	7.2E-19	72	123	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.87E-16	72	125	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-9	72	122	IPR001005	SANT/Myb domain
Pfam	PF00249	4.7E-11	73	119	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-11	73	118	IPR009057	Homeodomain-like
CDD	cd00167	1.70E-8	75	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MMRRCSLCGN GGHNSRTCPN RGVRLFGLVQ IGSVSVVLGM ILICSSVPTL TGKSNGLVLV 60 YCSIVAQGDV TRRVPWTEEE HRMFLFGLQK LGKGDWRGIS RNFVVTRTAT QVASHAQKYF 120 IRQTNASRRK RRSSLFDIVP NEPADGQFYP MDSQEPEAQS NNPPPATPAR DEECKSMDSN 180 SNEGEGAVPK PESLPCSYPW FSPYSSPFFP FPFPCPSGYR EVITSEKTHE IVKPTAMHSK 240 TPINVNELVG MSALSLGESN GEAGPSSLSL KLPGGSDRQS AFHAKAP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008775190.1	1e-160	transcription factor MYBS3-like
Swissprot	Q7XC57	3e-89	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A2H3WXJ2	1e-158	A0A2H3WXJ2_PHODC; transcription factor MYBS3-like
STRING	XP_008775190.1	1e-159	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1939	37	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	5e-56	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099]