PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1140701g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 484aa    MW: 52724.9 Da    PI: 6.9029
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1140701g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.64.6e-27158214259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dD ynWrKYGqK+vk+se+ rsYYrC++a+C+vkkkve+++ d++v +i+Y+g Hnhe
  PDK_30s1140701g002 158 DDDYNWRKYGQKQVKNSENIRSYYRCAYANCSVKKKVECCQ-DGHVADIVYSGCHNHE 214
                         8***************************************9.***************8 PP
2WRKY103.11.6e-32317374259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYG+K vkg+++prsYYrCt+ gCpv+k+vers+ed k + itYeg+Hnhe
  PDK_30s1140701g002 317 SDGYRWRKYGRKFVKGNPNPRSYYRCTHIGCPVRKHVERSSEDAKSLLITYEGKHNHE 374
                         7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-25147216IPR003657WRKY domain
PROSITE profilePS5081119.175152216IPR003657WRKY domain
SuperFamilySSF1182903.66E-22154216IPR003657WRKY domain
SMARTSM007741.3E-28157215IPR003657WRKY domain
PfamPF031061.4E-20158214IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-33301376IPR003657WRKY domain
SuperFamilySSF1182907.85E-28309376IPR003657WRKY domain
PROSITE profilePS5081134.234311376IPR003657WRKY domain
SMARTSM007743.6E-36316375IPR003657WRKY domain
PfamPF031061.4E-25318374IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MAEEPGSGVP EHDKADREGS PESSSCPPLE AEGAHPYLVH LEDLLPCFHA LDTYLEGSSL  60
KGQFAMTHQA VLASVMAQAL MQLQKAYPSS SSEFLRNSVT QPQISNITLL PLQQDPLPVA  120
GNNACAPQME QPPSSHQKPQ SASIVVKTSS DDEKTSSDDD YNWRKYGQKQ VKNSENIRSY  180
YRCAYANCSV KKKVECCQDG HVADIVYSGC HNHEPPLRVR SSRERKAKRS APSVVNKKLD  240
LPGAENNATV SSASKLPHSS DGHEGDSAVK TEEDLGDKPD PKRRSTEKTI LDLAPVLKTI  300
RETKVILQTA CDVGLTSDGY RWRKYGRKFV KGNPNPRSYY RCTHIGCPVR KHVERSSEDA  360
KSLLITYEGK HNHELPPLKD GSNPPDSALL TAAAATAMTT NEQTPKNVPL LYETPTTKWL  420
PDVDGKVSNE QVQELGGEKA IESAQTLLTM GLSATSENAG SKNSGGIQQP RSNGNCAIVP  480
VENS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-28307376877Probable WRKY transcription factor 4
2lex_A9e-28307376877Probable WRKY transcription factor 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008803718.10.0probable WRKY transcription factor 4 isoform X1
TrEMBLA0A2H3YU710.0A0A2H3YU71_PHODC; probable WRKY transcription factor 4 isoform X1
STRINGXP_008803718.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-68WRKY DNA-binding protein 4