PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1141931g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 333aa MW: 37573.2 Da PI: 6.9912

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1141931g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.8	1e-53	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +kv + ++++ ++i evd++k+ePwdLp k+ ++ek+ yfF+ rd+ky+tg ++nrat++gyWkatgkdke PDK_30s1141931g003 17 LPPGFRFHPTDEELITHYLYQKVMDASFNA-RAIGEVDLNKSEPWDLPFKAGTGEKSGYFFCLRDRKYPTGLKTNRATEAGYWKATGKDKE 106 79*************************9.89***********9999999999***************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ ++ l+g+kktLvfy+grapkge+t+Wvmheyrle PDK_30s1141931g003 107 IHQ-GKFLIGMKKTLVFYRGRAPKGERTNWVMHEYRLE 143 9.999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.06E-60	13	168	IPR003441	NAC domain
PROSITE profile	PS51005	56.434	17	167	IPR003441	NAC domain
Pfam	PF02365	6.0E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEHGALVLSK GDDDMDLPPG FRFHPTDEEL ITHYLYQKVM DASFNARAIG EVDLNKSEPW 60 DLPFKAGTGE KSGYFFCLRD RKYPTGLKTN RATEAGYWKA TGKDKEIHQG KFLIGMKKTL 120 VFYRGRAPKG ERTNWVMHEY RLERKDPFYN LSRTAMNEWV ICKVFHKNSG EKKDTQLAGM 180 GSWFEDGLDS TLLGPLINDS HRSKNKASSA SVPTHVTCFS DALEGEMSHW ELLQNCYNFA 240 SLSTSSSSPS SLNHFEMSPP GSLNTTHGAS QIPGASLVQL LENNGYSMEK KSFKRERDNS 300 ITALTNNYME MHLFDCQENP NASARPLHPD GCF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-52	15	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-52	15	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-52	15	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-52	15	173	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-52	15	173	18	174	NAC domain-containing protein 19
3swm_B	5e-52	15	173	18	174	NAC domain-containing protein 19
3swm_C	5e-52	15	173	18	174	NAC domain-containing protein 19
3swm_D	5e-52	15	173	18	174	NAC domain-containing protein 19
3swp_A	5e-52	15	173	18	174	NAC domain-containing protein 19
3swp_B	5e-52	15	173	18	174	NAC domain-containing protein 19
3swp_C	5e-52	15	173	18	174	NAC domain-containing protein 19
3swp_D	5e-52	15	173	18	174	NAC domain-containing protein 19
4dul_A	5e-52	15	173	15	171	NAC domain-containing protein 19
4dul_B	5e-52	15	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008778339.1	0.0	NAC domain-containing protein 79-like isoform X1
Refseq	XP_008778340.1	0.0	NAC domain-containing protein 79-like isoform X1
Swissprot	Q9FLR3	1e-101	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A2H3X4T0	0.0	A0A2H3X4T0_PHODC; NAC domain-containing protein 79-like isoform X1
STRING	XP_008778339.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2730	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-100	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]