PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1143361g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 116aa    MW: 13245.8 Da    PI: 10.0486
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1143361g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM965.9e-30239755128
                 NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         e+e yfF  r+ ky++g+r nrat  gyWkatgkdke+++  ++++vg+kk+Lvfy+g+ p+g++tdW+mheyrl
  PDK_30s1143361g002  23 EQERYFFYLREAKYPNGNRLNRATGCGYWKATGKDKEIVALrSNQVVGMKKVLVFYHGKPPRGSRTDWIMHEYRL 97 
                         5688**********************************98757788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.1361116IPR003441NAC domain
PfamPF023651.8E-141797IPR003441NAC domain
SuperFamilySSF1019415.49E-3223104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MTSTSPAPTA EQNDQNDPPG GWEQERYFFY LREAKYPNGN RLNRATGCGY WKATGKDKEI  60
VALRSNQVVG MKKVLVFYHG KPPRGSRTDW IMHEYRLAGP ETRAGAFPQR KNSTHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-272310670151NO APICAL MERISTEM PROTEIN
1ut4_B8e-272310670151NO APICAL MERISTEM PROTEIN
1ut7_A8e-272310670151NO APICAL MERISTEM PROTEIN
1ut7_B8e-272310670151NO APICAL MERISTEM PROTEIN
3swm_A8e-272310673154NAC domain-containing protein 19
3swm_B8e-272310673154NAC domain-containing protein 19
3swm_C8e-272310673154NAC domain-containing protein 19
3swm_D8e-272310673154NAC domain-containing protein 19
3swp_A8e-272310673154NAC domain-containing protein 19
3swp_B8e-272310673154NAC domain-containing protein 19
3swp_C8e-272310673154NAC domain-containing protein 19
3swp_D8e-272310673154NAC domain-containing protein 19
4dul_A8e-272310670151NAC domain-containing protein 19
4dul_B8e-272310670151NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777977.13e-68NAC domain-containing protein 83-like
SwissprotQ9FY931e-39NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2H3X4027e-67A0A2H3X402_PHODC; NAC domain-containing protein 83-like
STRINGXP_008777977.11e-67(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.16e-42NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]