PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1145071g003
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family AP2
Protein Properties Length: 294aa    MW: 32317.3 Da    PI: 6.8842
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1145071g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.7e-15110161155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A++  +       k+ +lg++ t eeAa+a++ a+++++g
  PDK_30s1145071g003 110 SKYRGVARHHHNGRWEARLGLV----LGyKYLYLGTYETQEEAAQAYDLAALQFKG 161
                         89****99**********6663....235**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-11110161IPR001471AP2/ERF domain
CDDcd000182.21E-23110169No hitNo description
SuperFamilySSF541715.36E-16110169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-17111169IPR001471AP2/ERF domain
SMARTSM003807.1E-24111175IPR001471AP2/ERF domain
PROSITE profilePS5103218.413111169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MKKSPPSPPL PASRSSSPSN HAPLSSPNVN PVNKPRSKSK SKPKHRKGTD GLGDLKLTCG  60
TRIGSTLSKT READKVETYR EESEEMQAMS KEELVASLRR RSDGFARGVS KYRGVARHHH  120
NGRWEARLGL VLGYKYLYLG TYETQEEAAQ AYDLAALQFK GPDAVTNFDS CLYVNYPRPC  180
VKLPPRPQIS PPQEPRVGPM EPRESIDQTV PSEDIWDAIT WSTIGMDISN HVGFEGDIEQ  240
LFEGFETFSS DAGEGSLEGE IGQVMEGGLK PVISPNGSML QYPIIHIGYG SGLL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807363.11e-159AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A2H3Z2S11e-158A0A2H3Z2S1_PHODC; AP2-like ethylene-responsive transcription factor At1g79700
STRINGXP_008807363.11e-158(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2945624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-29AINTEGUMENTA-like 5