PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1147161g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 838aa MW: 94935.9 Da PI: 5.6639

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1147161g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.5	3e-25	158	244	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk+ GFsvrk + +++ r+g+i +r++vCs+eg+r+e++++ ++++r+ +rt+C a+++ k ++d++w v+k+ eHnH+la PDK_30s1147161g001 158 DFYNSYAKSKGFSVRKGHLSRR-RDGSIRDRHYVCSNEGTRQEHRTH--ITKKPRPLERTNCLARIEFKVNRDNVWIVNKFIDEHNHPLA 244 6***************9997.9999************9887..999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-22	158	244	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-29	405	498	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.953	672	719	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-4	692	716	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.0E-6	694	721	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 838 aa Download sequence Send to blast
MSTSNECASE ENAMLKLSPA PKECHDGFEM LVITNTNAAD GLAENITANG SAENINAADG 60 SAENINATDG SAENANATDG SVEDTNATDG SVEEMNAIDG SAKLANVVDG SVKNTSGIGE 120 SVKKTNILDG SPALDSINAS QLDPKVGMTF HSEEEAYDFY NSYAKSKGFS VRKGHLSRRR 180 DGSIRDRHYV CSNEGTRQEH RTHITKKPRP LERTNCLARI EFKVNRDNVW IVNKFIDEHN 240 HPLASPNKVH MLRSHRKKLP VQRAVFTEAD YYYGIKHSLL QDFESEDLHG TEDTGLVLKD 300 QCNCLSTKRI RDLESLLQDF ESEDFHGTED TGLVLKDQCN CLSTKRIRDL DKGDAQFLLD 360 YLKAKQSEDP SFFYAVQLDE KERLTNFFWA DARSIIDYAY FGDAVLFDTT YRTSRFDIPF 420 APFIGINHHK QIVIFGAALL LDETTESFVW LFKTFLAAMS ARQPKTIFTD WCAAMSKAIT 480 ISLPDTCHKL CLWHVVQNVP KHLNSVCSRE PNFQKEFENC IYGGVSEDDF HKRWDNLISK 540 YGLATNSWLK DLYAVREKWA LAYCNSFCGT MTTKQWAESM DNLFKIHFYR KLPLSKFIMQ 600 YFKALVQLRE DELVEDYESR QTKPVLLVDI PMLTEAAESY TRMVYMDFEY EYKSQLACLC 660 EPVGMDGTVY TFKVSVPQKQ SSGHVEFNLS NATVTCSCKK FESMGFLCMH ALKVLNNNNI 720 LYLPPRYILK RWTKYAKDGP LSDGHQSVVD SHLQESLSLR YSRVCHKAIA VAVKSALSKD 780 ALDILEHGLD RLIAEMENLL HNASLNEQRE DVNVDDNMQH NTLDASNICF DGFEFTAR

Sequence ? help Back to Top

Protein Sequence Length: 838 aa Download sequence Send to blast

MSTSNECASE ENAMLKLSPA PKECHDGFEM LVITNTNAAD GLAENITANG SAENINAADG  60
SAENINATDG SAENANATDG SVEDTNATDG SVEEMNAIDG SAKLANVVDG SVKNTSGIGE  120
SVKKTNILDG SPALDSINAS QLDPKVGMTF HSEEEAYDFY NSYAKSKGFS VRKGHLSRRR  180
DGSIRDRHYV CSNEGTRQEH RTHITKKPRP LERTNCLARI EFKVNRDNVW IVNKFIDEHN  240
HPLASPNKVH MLRSHRKKLP VQRAVFTEAD YYYGIKHSLL QDFESEDLHG TEDTGLVLKD  300
QCNCLSTKRI RDLESLLQDF ESEDFHGTED TGLVLKDQCN CLSTKRIRDL DKGDAQFLLD  360
YLKAKQSEDP SFFYAVQLDE KERLTNFFWA DARSIIDYAY FGDAVLFDTT YRTSRFDIPF  420
APFIGINHHK QIVIFGAALL LDETTESFVW LFKTFLAAMS ARQPKTIFTD WCAAMSKAIT  480
ISLPDTCHKL CLWHVVQNVP KHLNSVCSRE PNFQKEFENC IYGGVSEDDF HKRWDNLISK  540
YGLATNSWLK DLYAVREKWA LAYCNSFCGT MTTKQWAESM DNLFKIHFYR KLPLSKFIMQ  600
YFKALVQLRE DELVEDYESR QTKPVLLVDI PMLTEAAESY TRMVYMDFEY EYKSQLACLC  660
EPVGMDGTVY TFKVSVPQKQ SSGHVEFNLS NATVTCSCKK FESMGFLCMH ALKVLNNNNI  720
LYLPPRYILK RWTKYAKDGP LSDGHQSVVD SHLQESLSLR YSRVCHKAIA VAVKSALSKD  780
ALDILEHGLD RLIAEMENLL HNASLNEQRE DVNVDDNMQH NTLDASNICF DGFEFTAR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008809265.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2H3Z6M6	0.0	A0A2H3Z6M6_PHODC; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008809265.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-127	FAR1-related sequence 5