PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1148281g014
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 239aa    MW: 26172.5 Da    PI: 5.0559
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1148281g014genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-20121171255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAaka+++a+ +++g
  PDK_30s1148281g014 121 RYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAVEAAKAYDRAAFQMRG 171
                         7********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-14121171IPR001471AP2/ERF domain
SMARTSM003802.3E-37121185IPR001471AP2/ERF domain
CDDcd000182.24E-28121180No hitNo description
Gene3DG3DSA:3.30.730.103.5E-32121180IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22121180IPR016177DNA-binding domain
PROSITE profilePS5103223.841121179IPR001471AP2/ERF domain
PRINTSPR003679.9E-11122133IPR001471AP2/ERF domain
PRINTSPR003679.9E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MASIVDDDST LDLIREHLLG DLPLSPLPPP SAPHGIAVSD YLDTTQPFSG SGRIDPYGVL  60
EAYRFAEPVD PMIRFGGDSQ QASDLCLPSL TISLPPVRKF EIEWTEAAAA VGPAEHNDGR  120
RYRGVRQRPW GKFAAEIRDP NRRGSRIWLG TFDTAVEAAK AYDRAAFQMR GCKAILNFPN  180
EIGNSGRCIP PPPPPLATAG KRKRAPAAAE EAKEGEMRPI KKERSPEMEE SAEENIPSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-28119186369ATERF1
3gcc_A2e-28119186369ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026658220.11e-173ethylene-responsive transcription factor ERF107-like
TrEMBLA0A3Q0HXY91e-172A0A3Q0HXY9_PHODC; ethylene-responsive transcription factor ERF107-like
STRINGXP_008781946.11e-170(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-37ethylene responsive element binding factor 5