PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1148891g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 154aa MW: 17179.8 Da PI: 5.541

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1148891g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.9	2e-07	1	24	24	48
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W+ a +++ gRt++++k++w+++l PDK_30s1148891g001 1 WSMMATRLP-GRTDNEIKNYWNTHL 24 999****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	3.83E-6	1	24	No hit	No description
SuperFamily	SSF46689	1.14E-6	1	31	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.667	1	28	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-12	1	25	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
WSMMATRLPG RTDNEIKNYW NTHLRKKLLL MGIDPVTHRP KADLDLLAML PPLLAAAQNL 60 GNLTAPLDNV LRLQADAANL ARFQILQSLI QLTSITSPLD ADARNLLGSA SLQNYHQFSD 120 LLQMNHQLEG VMDGSLGLPQ NQIPFELQED SLLF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026662258.1	4e-97	transcription factor MYB53-like
Swissprot	Q9S9Z2	7e-23	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A2H3ZST4	1e-95	A0A2H3ZST4_PHODC; transcription factor MYB53-like
STRING	XP_008796312.1	3e-97	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	7e-23	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]