PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1149101g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 341aa    MW: 38153.3 Da    PI: 7.861
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1149101g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.2e-33201258259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h+
  PDK_30s1149101g001 201 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCSVKKRVERSYQDPTIVITTYEGQHTHQ 258
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-35185260IPR003657WRKY domain
SuperFamilySSF1182902.62E-29192260IPR003657WRKY domain
PROSITE profilePS5081131.491195260IPR003657WRKY domain
SMARTSM007744.0E-38200259IPR003657WRKY domain
PfamPF031061.0E-25201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSGENRELYH HGHHFLRDRG DLPFHDDLSS FLSQRPSGAT LHDLQGHDLQ APSPYMSFTD  60
YLHGSSDYGL LAKAFDMSYP SPELLGPRDG GAVKQELVVD TNITANLNVS TGGGGGGGTT  120
PATPNSSVSS SSTEAQGEED SGRWKKDQQK VQEEEEKQQI KEGEDGGDKT KKVNKPRKRG  180
EKRQRAPRFA FMTRSEVDHL EDGYRWRKYG QKAVKNSPYP RSYYRCTTQK CSVKKRVERS  240
YQDPTIVITT YEGQHTHQSP ATIRGSTHIL APPPTVPTSF RQDLLIHHQM PQLNAGSQQM  300
QGDANPNVYL PTLPTPLQQL QFPDYGLLQD IVPSFIHNKQ P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27190261778Probable WRKY transcription factor 4
2lex_A2e-27190261778Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777186.10.0WRKY transcription factor 28-like
TrEMBLA0A2H3X2760.0A0A2H3X276_PHODC; WRKY transcription factor 28-like
STRINGXP_008777186.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-49WRKY DNA-binding protein 71